Gene Information

Name : Sthe_0547 (Sthe_0547)
Accession : YP_003318807.1
Strain :
Genome accession: NC_013523
Putative virulence/resistance : Virulence
Product : FliI/YscN family ATPase
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : 3.6.3.14
Position : 620198 - 621526 bp
Length : 1329 bp
Strand : -
Note : KEGG: mta:Moth_0774 ATPase FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase

DNA sequence :
ATGTCTAGCGCCGCCGTCAGCGTCACCGGCGACATGCTGCGCCGCCTCGCCACGATCACCCCGATCCGCCGCGAGGGTCG
GGTCGTTCAGGGCATCGGCCTGACGATCGAGGCGCAGGGGCTCGAGCTGGAGATCGGCGACATCTGCCACATCTACCCGT
CGCGCTCCGAGGAGGGCCGCATCACCGCCGAGGTCGTCGGCTTCCGCGACGACCGCCTGGTCCTGGTCCCGCTGGCTGAG
CTACGGGGCGTGCGCTCCGGCAGCCGGGTAGTTGCGCGCCGCACGTCGTACAGCGTGAAGGTCGGACCGGAATTGCTCGG
CCGGGTCATCGACGGGCTCGGGCGACCGATCGACGGGCAGGGGCCGCTCCTGTGCCGCGACGAGACCCGCCTCAGCAGCA
GCCCGCCCGATCCGTTGAGCCGCATGCCAATCGAGCACCCGCTCCCGACCGGCATCCGCGCAATCGATGCCCTGATCACC
TGCGGTCGCGGGCAGCGCCTGGGTATCTTCGCCGGGTCCGGCGTCGGCAAGAGCACGCTGCTGGGCATGATCTGCCGCAA
CGCCGACTGCGACGTGCGCGTGGTCGCCCTCATCGGCGAGCGTGGCCGCGAGGTGCAGGAATTCATCGAGCGCGACCTCG
GACCGGAGGGTCTGGCGCGCTCGGTCGTGGTCGTCTCCACCTCCGACCAGCCGGCCCTGTTGCGTCTGAAAGCCGCCTGG
ACGGCGACGATGATCGCCGAGTACTTCCGCGACCGCGGCCTGAACGTCGCTCTGCTGATGGACTCGGTGACCCGCCTCGC
CATGGCTCAGCGGGAGATCGGCCTGGCAGTTGGCGAGCCGCCGACCACGCGCGGCTACACCCCCTCCGTCTTCGCCCTGC
TGCCACGCCTGCTGGAGCGCGCCGGGAACGCGGAGCGGGGCAGCATCACCGCCTTCTACACCGTCCTCGTCGAGGGGGAC
GACCTGACCGAGCCGGTGACGGACGCCGTGCGCGGCATCCTGGATGGCCACATCTACCTCTCACGCAAGCTGGCAGACAG
CGGCCACTTCCCGGCGATTGAGGTGCTCGGGAGTGTCAGCCGGCTGATGAACGCGATCGTCGACGAGCGCCACCGCCGCC
TCGCAGCGGAGGTCCGTGAGCTCATGGCCGCCTACGAGGGCGCGCGCGATCTGATCGAGATCGGCGCCTACGCCGCCGGG
TCCAACCCGGTCGTTGACCGCGCCATCGCCCACATGCCGCGCATCCGTGAGTTCCTGCGCCAGGCACCGGACGAACCCGC
GCGCATGGACGAGACGCTCAACCGGCTGGCGTCAGTGCTGGAGGAGTGA

Protein sequence :
MSSAAVSVTGDMLRRLATITPIRREGRVVQGIGLTIEAQGLELEIGDICHIYPSRSEEGRITAEVVGFRDDRLVLVPLAE
LRGVRSGSRVVARRTSYSVKVGPELLGRVIDGLGRPIDGQGPLLCRDETRLSSSPPDPLSRMPIEHPLPTGIRAIDALIT
CGRGQRLGIFAGSGVGKSTLLGMICRNADCDVRVVALIGERGREVQEFIERDLGPEGLARSVVVVSTSDQPALLRLKAAW
TATMIAEYFRDRGLNVALLMDSVTRLAMAQREIGLAVGEPPTTRGYTPSVFALLPRLLERAGNAERGSITAFYTVLVEGD
DLTEPVTDAVRGILDGHIYLSRKLADSGHFPAIEVLGSVSRLMNAIVDERHRRLAAEVRELMAAYEGARDLIEIGAYAAG
SNPVVDRAIAHMPRIREFLRQAPDEPARMDETLNRLASVLEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 5e-83 54
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 1e-96 53
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-96 53
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-96 53
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-96 53
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-96 53
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 1e-96 53
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 1e-96 53
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 1e-96 53
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 8e-96 53
lscN AAO18044.1 LscN Virulence TTSS locus Protein 2e-91 52
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 5e-79 50
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 5e-79 50
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 2e-79 50
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 3e-79 50
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-79 50
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 3e-79 50
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 3e-79 50
escN AAC31513.1 L0034 Virulence LEE Protein 3e-79 48
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 3e-79 48
escN AAC38383.1 EscN Virulence LEE Protein 2e-79 48
escN AAK26715.1 EscN Virulence LEE Protein 6e-79 48
escN NP_290268.1 hypothetical protein Virulence LEE Protein 4e-79 48
escN AAL57542.1 EscN Virulence LEE Protein 6e-79 48
ECs4568 NP_312595.1 EscN Virulence LEE Protein 4e-79 48
escN CAC81862.1 EscN protein Virulence LEE II Protein 6e-79 48
escN CAI43874.1 EscN protein Virulence LEE Protein 5e-79 48
escN YP_003236088.1 translocator EscN Virulence LEE Protein 7e-79 48
escN YP_003223475.1 translocator EscN Virulence LEE Protein 7e-79 48
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 6e-79 48
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 3e-68 48
unnamed AAL06369.1 EscN Virulence LEE Protein 4e-78 47
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 9e-69 47
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 8e-71 47
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 3e-70 46
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 2e-73 46
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 1e-70 46
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 2e-72 45
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 1e-72 45
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 1e-72 45
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 4e-68 45
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 4e-68 45
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 6e-77 44
ECs3730 NP_311757.1 ATP synthase SpaL Not tested LIM Protein 1e-69 44
invC AAS66861.1 InvC Not tested SSR-2 Protein 6e-70 43
ysaN AAS66842.1 YsaN Not tested SSR-1 Protein 9e-66 42
spaI NP_457288.1 secretory apparatus ATP synthase (associated with virulence) Virulence SPI-1 Protein 4e-64 42
spaI NP_806497.1 ATP synthase SpaL Virulence SPI-1 Protein 4e-64 42
invC NP_461815.1 ATP synthase SpaL Virulence SPI-1 Protein 4e-64 42
invC YP_217813.1 ATP synthase SpaL Virulence SPI-1 Protein 4e-64 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sthe_0547 YP_003318807.1 FliI/YscN family ATPase VFG0192 Protein 2e-92 56
Sthe_0547 YP_003318807.1 FliI/YscN family ATPase VFG0390 Protein 4e-90 54
Sthe_0547 YP_003318807.1 FliI/YscN family ATPase VFG0048 Protein 2e-96 53
Sthe_0547 YP_003318807.1 FliI/YscN family ATPase VFG2144 Protein 1e-92 53
Sthe_0547 YP_003318807.1 FliI/YscN family ATPase VFG1254 Protein 5e-93 53
Sthe_0547 YP_003318807.1 FliI/YscN family ATPase VFG2499 Protein 3e-87 51
Sthe_0547 YP_003318807.1 FliI/YscN family ATPase VFG2331 Protein 3e-88 50
Sthe_0547 YP_003318807.1 FliI/YscN family ATPase VFG0515 Protein 1e-79 50
Sthe_0547 YP_003318807.1 FliI/YscN family ATPase VFG0730 Protein 1e-79 48
Sthe_0547 YP_003318807.1 FliI/YscN family ATPase VFG0812 Protein 2e-79 48
Sthe_0547 YP_003318807.1 FliI/YscN family ATPase VFG2459 Protein 5e-71 45
Sthe_0547 YP_003318807.1 FliI/YscN family ATPase VFG1008 Protein 6e-69 44
Sthe_0547 YP_003318807.1 FliI/YscN family ATPase VFG0555 Protein 2e-64 42
Sthe_0547 YP_003318807.1 FliI/YscN family ATPase VFG1778 Protein 2e-64 41