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Name : Dd586_0215 (Dd586_0215) Accession : YP_003331817.1 Strain : Dickeya dadantii Ech586 Genome accession: NC_013592 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 245865 - 249893 bp Length : 4029 bp Strand : + Note : KEGG: dze:Dd1591_3885 DNA-directed RNA polymerase, beta subunit; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2 domain 3; RNA polyme DNA sequence : ATGGTTTACTCCTATACCGAGAAAAAACGTATTCGTAAGGATTTTGGGAAACGTCCACAAGTTTTGGATATCCCATATCT CCTTTCTATCCAGCTTGACTCGTTCCAGAAGTTCATCGAGCAAGATCCGGAAGGTCAGTATGGTCTGGAAGCTGCATTCC GTTCCGTATTCCCTATCTCAAGTTACAGCGGCAGCTCTGAACTGCAATATGTCAGCTACCGTCTGGGTGAGCCGGTATTT GACGTACAAGAGTGTCAAATCCGTGGCGTTACCTACTCCGCGCCGCTACGCGTAAAACTGCGTCTGGTGATCTACGAGCG CGAAGCGCCGGAAGGCACCGTTAAAGACATCAAAGAACAAGAAGTGTACATGGGCGAAATCCCGCTCATGACCGACAACG GTACCTTTGTTATCAATGGTACTGAGCGTGTTATCGTTTCTCAGTTACATCGTAGTCCTGGCGTCTTCTTTGACAGCGAT AAGGGTAAAACCCACTCTTCCGGTAAGGTGCTGTATAACGCACGTATTATTCCTTACCGTGGTTCCTGGCTGGACTTTGA ATTCGACCCGAAAGACAACCTGTTTGTCCGTATCGACCGTCGCCGTAAACTGCCGGCTACCATCATTCTGCGCGCATTGA ATTACTCCACCGAAGAAATTCTGGACCTGTTCTTCGATAAAGTGGTGTATGAAATCCACAACAACAAGTTGCAGATGGAA CTGGTGCCGGAGCGTCTGCGTGGCGAAACCGCCTCGTTCGACATCGAAGCCGACGGTAAAGTCTACGTTGAAAAAGGCCG CCGTATCACTGCGCGCCATATCCGTCAGTTGGAAAAAGACGGTATCGAACGTATCGAAGTACCGGTTGAATACATCGCAG GCAAAGTGCTGGCGAAAGACTATGTGGATGAAAGCACCGGTGAAGTGATCGCTATGGCGAACATGGAGCTGTCGCTGGAT CTGCTGGCTAAACTGAGTCAGTCTGGCCACAAGCGTATTGATACGCTGTTCACCAACGATCTGGACCACGGCCCGTACAT GTCCGAGACCCTGCGTGTTGACCCAACCAACGATCGCCTAAGTGCGCTGGTTGAGATCTACCGCATGATGCGTCCTGGCG AGCCGCCGACACGCGAAGCTGCTGAAACCCTGTTCGAAAATCTATTCTTCTCTGAAGATCGTTACGATTTGTCTGCGGTT GGCCGTATGAAGTTCAACCGTTCCCTGCTGCGCGAAGAGATTGAAGGCTCCGGCATTCTGAGCAAGGCAGACATTATCGA TGTGATGAAAAAACTCATCGATATTCGTAACGGTAAGGGTGAAGTCGACGATATCGACCATCTGGGTAACCGTCGTATCC GTTCTGTCGGTGAAATGGCGGAAAACCAATTCCGCGTTGGTCTGGTGCGTGTTGAGCGTGCGGTGAAAGAGCGTCTGTCT TTGGGCGATCTGGATACGCTGATGCCGCAGGACATGATCAATGCCAAGCCGATTTCTGCGGCGGTGAAAGAGTTCTTCGG TTCCAGCCAGCTGTCTCAGTTTATGGACCAGAACAACCCGCTGTCTGAGATTACGCATAAACGCCGTATCTCCGCTCTCG GCCCTGGCGGTCTGACCCGTGAACGTGCTGGCTTTGAAGTACGTGACGTACACCCGACTCACTACGGTCGCGTATGTCCT ATCGAAACGCCGGAAGGTCCGAACATCGGTCTTATCAACTCGCTGTCCGTGTATGCACAGACTAACGAGTATGGTTTCCT GGAAACCCCGTACCGCCGTGTACGCGATGGCGTGGTCACTGACGAAATTCATTACCTGTCGGCTATCGAAGAAGGCAACT ACGTTATTGCTCAGGCGAACACCAACCTGGATGACGAAGGCCACTTCATCGATGAACTGGTTACTTGCCGTAGCAAGGGC GAATCCAGCTTGTTCAGCCGCGATCAGGTTGACTACATGGACGTATCCACCCAACAGGTGGTCTCCGTCGGTGCTTCACT GATCCCGTTCCTGGAACACGATGACGCCAACCGCGCCTTGATGGGTGCGAACATGCAACGTCAGGCGGTTCCGACCCTGC GTGCTGATAAGCCGCTGGTTGGTACCGGTATGGAACGCGCTGTTGCCGTTGACTCCGGTGTAACTGCGGTTGCTAAACGC GGTGGTACCGTGCAGTACGTCGATGCCTCTCGTATCGTTATCAAAGTTAACGAAGAAGAGATGTATCCGGGCGAAGCAGG TATCGATATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACACCTGTATCAACCAGATGCCATGTGTGTCACTGG GTGAGCCGGTTGAGCGCGGCGATGTGTTGGCTGACGGTCCGTCTACCGACCTCGGTGAACTGGCGCTCGGTCAGAACATG CGCGTAGCGTTCATGCCGTGGAACGGTTACAACTTCGAAGACTCCATCCTCGTTTCCGAGCGTGTAGTACAGGAAGACCG TTTTACCACTATCCACATTCAGGAACTGGCGTGTGTGTCCCGTGACACCAAGCTGGGGCCAGAAGAGATCACCGCTGACA TCCCGAACGTGGGTGAAGCGGCGCTCTCCAAGCTGGATGAATCCGGTATCGTTTACATCGGTGCGGAAGTCACCGGCGGC GATATCCTGGTCGGTAAAGTGACGCCGAAAGGCGAAACTCAGCTGACGCCGGAAGAGAAACTGTTGCGTGCGATCTTCGG TGAGAAGGCGTCTGACGTAAAAGACTCTTCTCTGCGTGTGCCGAACGGCGTTTCCGGTACGGTTATCGACGTACAAGTCT TTACCCGCGATGGCGTGGAAAAAGACAAACGTGCGCTGGAAATCGAAGAAATGCAGCTCAAGCAGGCCAAGAAAGACCTG ACTGAAGAACTGCAGATTCTGGAAGCCGGTCTGTTTGCCCGTATCCATGATGTGCTGGTTGCCGGTGGCGTTGAAGCCGA CAAACTGGACAAGCTGCCGCGCGAGCGTTGGCTGGAACTGGGTCTGACCGACGAAGAGAAGCAGAATCAGCTGGAGCAGT TGGCTGAGCAGTACGACGAGCTGAAACACGAATTCGAGAAGAAACTCGAAGCCAAACGTCGCAAAATCACCCAGGGTGAT GATCTGGCACCGGGCGTGCTGAAGATCGTTAAGGTGTATCTGGCAGTTAAACGTCAGATCCAGCCGGGTGACAAGATGGC AGGTCGTCACGGTAACAAGGGTGTTATCTCCAAGATCAACCCGATCGAAGATATGCCTTACGACGAGAACGGCACGCCGG TCGACATCGTACTGAACCCGCTGGGCGTACCATCACGTATGAACATCGGTCAGATTCTGGAAACCCACCTGGGTATGGCA GCGAAAGGCATCGGTGACAAGATCAACGCCATGCTGAAACAGCAGCAGGAAGTGGCCAAACTGCGTGAGTTCATCCAGCG CGCTTATGACCTGGGCAACGATGTACGCCAGAAAGTTGACCTGAACACCTTCAGCGATGAAGAAGTTCTGCGTCTGGCAG AGAATCTGAAGAAAGGTATGCCGATCGCCACGCCGGTGTTCGACGGTGCCAAGGAAAACGAGATCAAAGAGTTGCTGAAA CTCGGCGATCTGCCGACTTCCGGTCAGATTACGCTGTTCGACGGCCGTACCGGTGAGCAATTCGAGCGTTCGGTTACCGT GGGCTACATGTACATGCTGAAACTGAACCACTTGGTTGATGACAAGATGCATGCCCGTTCAACCGGCTCTTATAGCCTGG TTACCCAGCAGCCGTTGGGTGGTAAGGCGCAGTTCGGTGGTCAGCGCTTCGGTGAGATGGAAGTGTGGGCGCTGGAAGCT TACGGCGCAGCCTATACCCTGCAGGAAATGCTGACGGTGAAATCCGATGACGTGAACGGCCGTACCAAGATGTACAAAAA CATCGTGGATGGCGATCACCGGATGGAACCGGGTATGCCGGAATCCTTCAACGTATTGTTGAAAGAAATCCGCTCCCTGG GTATCAACATCGAGCTGGAAGAAGAGTAA Protein sequence : MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPISSYSGSSELQYVSYRLGEPVF DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYSTEEILDLFFDKVVYEIHNNKLQME LVPERLRGETASFDIEADGKVYVEKGRRITARHIRQLEKDGIERIEVPVEYIAGKVLAKDYVDESTGEVIAMANMELSLD LLAKLSQSGHKRIDTLFTNDLDHGPYMSETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAETLFENLFFSEDRYDLSAV GRMKFNRSLLREEIEGSGILSKADIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP IETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVTDEIHYLSAIEEGNYVIAQANTNLDDEGHFIDELVTCRSKG ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR GGTVQYVDASRIVIKVNEEEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL TEELQILEAGLFARIHDVLVAGGVEADKLDKLPRERWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD DLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA AKGIGDKINAMLKQQQEVAKLREFIQRAYDLGNDVRQKVDLNTFSDEEVLRLAENLKKGMPIATPVFDGAKENEIKELLK LGDLPTSGQITLFDGRTGEQFERSVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 71 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 71 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Dd586_0215 | YP_003331817.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 97 |
| Dd586_0215 | YP_003331817.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 97 |
| Dd586_0215 | YP_003331817.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 97 |
| Dd586_0215 | YP_003331817.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 97 |
| Dd586_0215 | YP_003331817.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 96 |
| Dd586_0215 | YP_003331817.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 93 |
| Dd586_0215 | YP_003331817.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 74 |
| Dd586_0215 | YP_003331817.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 71 |
| Dd586_0215 | YP_003331817.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 71 |
| Dd586_0215 | YP_003331817.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 71 |
| Dd586_0215 | YP_003331817.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 71 |
| Dd586_0215 | YP_003331817.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 70 |
| Dd586_0215 | YP_003331817.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 70 |
| Dd586_0215 | YP_003331817.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 69 |
| Dd586_0215 | YP_003331817.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 66 |
| Dd586_0215 | YP_003331817.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 65 |
| Dd586_0215 | YP_003331817.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 64 |
