Gene Information

Name : RMDY18_07570 (RMDY18_07570)
Accession : YP_003362409.1
Strain : Rothia mucilaginosa DY-18
Genome accession: NC_013715
Putative virulence/resistance : Resistance
Product : antimicrobial peptide ABC transporter ATPase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 809134 - 809901 bp
Length : 768 bp
Strand : +
Note : -

DNA sequence : 
ATGACTACGACAACTCCTCACGCACAGACGGCGCAGCCTGCCGTCTCCGCACGAAACCTTTCCAAAACCTACGGCATGGG
TGAAGCAACCGTCCACGCCCTCAACAACGTCTCCGTCGACTTTGAGCAGGGCAAGTTCACCGCCATTATGGGTCCCTCCG
GCTCGGGCAAGTCCACGCTGATGCAGACCATCGCAACCCTGGACACCCCCGACCCGAACCCGGCAACCTCGATTCGTATC
GGCGGTACCGAGCTCTTCGGTCTGAAGGACAACGCCCTCACCGAATTCCGCCGCGAACACATCGGCTTCATCTTCCAGGC
GTTCAACCTGGTGCCCACCCTCACCGCGGGCCAGAACATTGACCTGCCCCTGGGCCTCGCCGGTAAGAAGCCGGACCCGC
AGTGGCGCGACTACCTGGTTAAGACCCTCGGCCTGGAAACCCGCCTCGACCACCGCCCCGAACAGCTCTCCGGCGGTCAG
CAGCAGCGTGTCGCCATCGTGCGCGCCCTGCTTGCACGCCCCGAAGTGGTCTTCGCCGACGAACCGACCGGTAACCTCGA
CTCCAACTCCGGCGCCGAGGTGTTGCGCCTGCTGCGTGCCGCCGCAACCGACCACGCACAGACCATCCTCATGGTCACCC
ACGACGCAAACGCCGCCTCCTACGCAGATCGCGTGGTCTTCATCAAGGACGGCATGGTCGCCGGCGAAATGATCGAACCC
ACCTACGACGCCGTCCTCGGCGCAATGGCACAGCTGGAAGGTCGATAA

Protein sequence : 
MTTTTPHAQTAQPAVSARNLSKTYGMGEATVHALNNVSVDFEQGKFTAIMGPSGSGKSTLMQTIATLDTPDPNPATSIRI
GGTELFGLKDNALTEFRREHIGFIFQAFNLVPTLTAGQNIDLPLGLAGKKPDPQWRDYLVKTLGLETRLDHRPEQLSGGQ
QQRVAIVRALLARPEVVFADEPTGNLDSNSGAEVLRLLRAAATDHAQTILMVTHDANAASYADRVVFIKDGMVAGEMIEP
TYDAVLGAMAQLEGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RMDY18_07570 YP_003362409.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene798.p Protein 5e-47 49
RMDY18_07570 YP_003362409.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene598.p Protein 1e-46 47
RMDY18_07570 YP_003362409.1 antimicrobial peptide ABC transporter ATPase NC_008702.1.4606598. Protein 3e-40 45
RMDY18_07570 YP_003362409.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7686878. Protein 3e-43 43