|
Name : cts1U (ROD_27711) Accession : YP_003366300.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Unknown Product : T6SS protein Cts1U Function : - COG functional category : S : Function unknown COG ID : COG3455 EC number : - Position : 2924258 - 2925613 bp Length : 1356 bp Strand : - Note : DotU component of T6SS DNA sequence : ATGAAAGACGATCTTAACCTGCAACTCTCCGCGGAACCGGCGGAGGATGAGGGGAGTTCGCCGCAGGCGTTGGGTAGGTT CCTGCTGGATGAACAGGGGGAGTGGATACAGGAGCCGGAAGCGACGTCGAAAGAGGAAACCGGGCCTGTTGGCGAGCATA CGGCGCGTGGTGAACACGCACTGAAAAGCGAAAGCGTGCAGCAGCGGATCTTACGCGTGAAGGCGGCGGAAAATCCGCTG CTGGAAGCCGCGCAACCGCTACTGCGCGCGCTTGGCGATATGCCGGAGCAGATTAACGATATTACCCATGTCGAAATCCT CAAAAACACCCTCAAAAGTCAGATCACGCTGTTCGGCGTTGTCTGTGACGAGGTGAATATTCCGTGGAAAAAGATGGCGA TCGTGCGTTATTGCCTCTGTACCGCGCTTGATGAGGCGGCGCATACCACGGCATGGGGGCTTGAAGCGGGCTGGTCGCAG AGTAACCTGCTGAACCACTTTGAAGGAGATAACGACGGAGGGAATAAATTCTTTCTGCTGGTTGGCCGTCTCTCCATGAA TCCCACTGAATTCGCGGATGTGCTGGAGGTGTTGCTGCGCATTCTGGGGCTGGGGTTTGAAGGGCGTTACAGCATTATTG AAGATGGCGACCGCCAGCTCAGCAAAATTCGCCAGCGTCTGTTGACCCTGATCCAAAGCACGCGAAACACCACGCCGCCC GCGCTGTCGCCGCATGGGCTGCAACCGCATGGACCTGCGGCGCGCGAGAAGCTGGCGATCCCCGTGCGGCTAAGCGCGCT GTGCGCTGGCGTACTGGTGGTGTCGTCGTTTCTCTGGTGCAAATTCTGGTTACTGTCGCGCAGTGACGGCATCACTAATG ACATCTATGCCATGCAAAACTTCAGCGTGCCCGTGGTGCAACCTGCCATGCGTCTGAAGCTGGCGGTGCTGCTGCGTAAC GAAATCAGGCAGCAGCTTCTCAGCGTGGATGAGAACCAGAAGCAGAGCAAAGTGGTGCTGAAAGGGGATGCGTTGTTCCT GTCCGGCTCTGTCCGCGTTCAGCCGGAGATGGTGAAAGTTATTGAACGTATCGCCAGCGAAGTCCAACGCGTGAACGGCG ACGTATTGATTGTCGGCCATACGGACGCCACCCCGATCAGTCGGCCAGGCCTGCCCAATAACGTTGCGCTGTCGGAAAAA CGCGCGGCGGAAGTGGCGCAATATTTTATTGCGGCCGGGCTGCCGGAGAGCAAAGTGAAAGTCCGTGGCGTGGGGAGTAG TCAACCCGTGGCGAACGAAGCGACGGCTCAGGGAAGGGCGAAGAATCGCCGTGTCGAGTTTTTTGTCACGTATTAA Protein sequence : MKDDLNLQLSAEPAEDEGSSPQALGRFLLDEQGEWIQEPEATSKEETGPVGEHTARGEHALKSESVQQRILRVKAAENPL LEAAQPLLRALGDMPEQINDITHVEILKNTLKSQITLFGVVCDEVNIPWKKMAIVRYCLCTALDEAAHTTAWGLEAGWSQ SNLLNHFEGDNDGGNKFFLLVGRLSMNPTEFADVLEVLLRILGLGFEGRYSIIEDGDRQLSKIRQRLLTLIQSTRNTTPP ALSPHGLQPHGPAAREKLAIPVRLSALCAGVLVVSSFLWCKFWLLSRSDGITNDIYAMQNFSVPVVQPAMRLKLAVLLRN EIRQQLLSVDENQKQSKVVLKGDALFLSGSVRVQPEMVKVIERIASEVQRVNGDVLIVGHTDATPISRPGLPNNVALSEK RAAEVAQYFIAAGLPESKVKVRGVGSSQPVANEATAQGRAKNRRVEFFVTY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0305 | NP_454885.1 | putative membrane protein | Not tested | SPI-6 | Protein | 2e-65 | 42 |
