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Name : secD (ROD_04561) Accession : YP_003364091.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Unknown Product : protein-export protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 510260 - 512107 bp Length : 1848 bp Strand : + Note : - DNA sequence : GTGTTAAACCGTTATCCTTTGTGGAAGTATATCATGCTGATCGTCGTGATTATCGTCGGTCTGCTGTATGCGCTTCCCAA CCTGTATGGTGAGGATCCGGCCGTTCAAATCACTGGCGCGCGCGGCGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCC AGAATACGTTACAACAAGAAAAAATTACCGCGAAGTCTGTGGCACTGGAAGAGGGCGCTATCCTTGCGCGCTTCGACACC ACCGACACTCAACTGCGCGCACGTGAAGCGCTGGTGGGCGTGCTGGGTGATAAATACGTCGTGGCGCTTAACCTTGCTCC GGCAACCCCGCGCTGGCTGGCCGCCATCAAAGCAGAGCCGATGAAACTCGGCCTTGATCTGCGTGGCGGCGTTCACTTCC TGATGGAAGTGGATATGGACACCGCTCTGGGCAAACTGCAGGAACAAAATATTGACAGCCTGCGCAGCGATCTGCGTGAA AAAGGCATTCCGTATACCACCGTCCGGAAAGAGGACAACTACGGGCTGAGCATTAACTTCCGTGACGCCAGCGCGCGTGA CGAAGCGATTGCTTATCTCAGCAAGCGTCATCAGGATCTGGTGATCTCCAGCCAGGGCAGCAATGCGCTGCGCGCGGTGA TGACCGATGCCCGTCTGAGCGAAGCGCGTGAGTATGCGGTTCAGCAGAACATCAACATCCTGCGCAACCGTGTTAACCAG CTGGGCGTCGCCGAACCGGTGGTTCAGCGTCAGGGCGCCGACCGTATCGTGGTCGAACTGCCGGGCATCCAGGACACCGC GCGCGCCAAAGAGATTCTCGGCGCGACGGCAACGCTGGAGTTTCGTCTGGTCAACACCAACGTAGATCAGGCCGCTGCGG CATCTGGTCGCGTACCGGGCGACTCCGAAGTGAAGCAAATGCGTGAAGGCCAGCCGGTGGTGCTGTACAAGCGCGTTATT CTGACCGGCGACCATATCACCGACTCCACGTCGAGCCAGGATGAATACAACCAGCCGCAGGTAAACATCTCGCTGGACAG CGCGGGCGGCAATATCATGTCTAACTTCACCAAAGACAATATCGGCAAGCCGATGGCGACGCTGTTCGTGGAGTATAAAG ACAGCGGTAAGAAAGACGCCAACGGTCGCGCGGTGCTGGTGAAACAGGAAGAGGTGATTAACATCGCCAACATCCAGTCT CGCCTCGGCAACAGCTTCCGTATTACCGGCATCAACAACCCGAACGAAGCGCGTCAGCTCTCTCTGCTGCTGCGCGCGGG CGCCCTGATTGCGCCGATTCAGATTGTTGAAGAACGCACTATCGGTCCAACCCTCGGGATGCAGAACATCAAGCAGGGCC TGGAAGCGTGTCTGGCCGGTCTGGCGGTATCTATCCTGTTCATGGTGCTGTTCTATAAGAAGTTTGGTCTGATTGCGACC AGCGCGCTGATCGCTAACCTGGTGCTGATTGTCGGCGTGATGTCGCTGCTGCCGGGGGCCACGCTGAGTATGCCGGGGAT TGCGGGGATAGTCTTAACCCTTGCCGTCGCCGTCGATGCGAACGTACTGATCAACGAACGTATTAAAGAAGAGTTGAGCA ACGGGCGTTCGATCCAGCAGGCGATCAACGAGGGGTATGCGGGCGCGTTCAGTTCCATTTTCGATGCGAACATTACGACG CTGATTAAGGTCATTATCCTGTACGCGGTCGGCACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGC GACGTCGATGTTTACCGCGATCGTCGGTACACGTGCCATCGTAAACCTGCTGTATGGCGGCAAGCGCGTCAAGAAGCTGT CAATCTGA Protein sequence : MLNRYPLWKYIMLIVVIIVGLLYALPNLYGEDPAVQITGARGVAASEQTLIQVQNTLQQEKITAKSVALEEGAILARFDT TDTQLRAREALVGVLGDKYVVALNLAPATPRWLAAIKAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLRE KGIPYTTVRKEDNYGLSINFRDASARDEAIAYLSKRHQDLVISSQGSNALRAVMTDARLSEAREYAVQQNINILRNRVNQ LGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQMREGQPVVLYKRVI LTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINIANIQS RLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLAVSILFMVLFYKKFGLIAT SALIANLVLIVGVMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSIQQAINEGYAGAFSSIFDANITT LIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 2e-122 | 49 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 2e-122 | 49 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 2e-122 | 49 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-122 | 49 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 4e-122 | 48 |
