Gene Information

Name : Psta_1730 (Psta_1730)
Accession : YP_003370265.1
Strain : Pirellula staleyi DSM 6068
Genome accession: NC_013720
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2160245 - 2160922 bp
Length : 678 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA1824 lipoprotein transporter ATP- binding subunit

DNA sequence : 
ATGGCTAAGCTTGTGGCGACGCATCTGAGCAAATCGTTTCCGACACGCAGCGAGCCGCTGGTGGTGCTCCGCGATGTCTC
ACTCGAGATTCGCTCGGGAGAAAGTGCCGCGATCATCGGCCCCAGTGGCAGCGGCAAGAGCACACTCTTGCATCTCATCG
GCGGGCTCGATGCACCCACCAGTGGCACGATTGATCTTGATGGTGAAAATCCCCACACATTGGCTCCCGATAAACTGGCC
CACTTCCGCAATCATAATGTCGGCTTCGTGTTTCAAGATCATCATTTGCTCCCGCAGCTGACGGTCCTTGAAAACGTACT
TATCCCCGCCATGGCCGAAACCGCGCCGACACCTGCCATGATCGAGCGCGCGCGACAGCTCCTCACGCGCGTGGGACTCG
CCGCGCGACTCGATCATCGCCCCGCAGAACTCTCGGGTGGCGAGCGGCAGCGCTGCGGCATTGCTCGCGCTCTACTGATG
AAGCCCAAACTGCTGCTGGCCGATGAACCGACAGGCAATCTCGACCAGAAAACAGCCACCGAAGTGGCCCAGCTCTTGGG
CGAGATTCATACGCAAGAGAATGCCATTTTGCTCATCGTGACGCACAGTAAAGAACTCGCCGCGATTGCCCAAAAACGTT
ACGAGATGAACAGCGGACTACTCGAGCCGCGCAGCTAA

Protein sequence : 
MAKLVATHLSKSFPTRSEPLVVLRDVSLEIRSGESAAIIGPSGSGKSTLLHLIGGLDAPTSGTIDLDGENPHTLAPDKLA
HFRNHNVGFVFQDHHLLPQLTVLENVLIPAMAETAPTPAMIERARQLLTRVGLAARLDHRPAELSGGERQRCGIARALLM
KPKLLLADEPTGNLDQKTATEVAQLLGEIHTQENAILLIVTHSKELAAIAQKRYEMNSGLLEPRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psta_1730 YP_003370265.1 ABC transporter NC_008702.1.4606598. Protein 2e-35 46
Psta_1730 YP_003370265.1 ABC transporter NC_012469.1.7685735. Protein 1e-32 43
Psta_1730 YP_003370265.1 ABC transporter NC_012469.1.7686878. Protein 8e-38 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psta_1730 YP_003370265.1 ABC transporter VFG2059 Protein 8e-17 43