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Name : Slin_4477 (Slin_4477) Accession : YP_003389256.1 Strain : Spirosoma linguale DSM 74 Genome accession: NC_013730 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 5425694 - 5429509 bp Length : 3816 bp Strand : - Note : KEGG: gur:Gura_1061 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 2; RNA polymerase s DNA sequence : GTGATTGGGTATCCAGACTTTCTGGATATTCAAGTAAAATCCTTCAAAGATTTTTTCCAGCTTGACACTCCCTCCAACCA ACGGTCGGAGGAAGGCTTGTTCAAGGTATTCCAGGAAAATTTCCCCATTTCAGACTCCCGTGAAAACTTCAAGCTGGAGT TCATCGACTATCTGGTTGATCCCCCGAAGTACTCGGTTGACGAGTCTATCGACCGGGGTTTGACGTATTCGGTGCCTTTG AAAGCCAAACTGCGTCTGACAAACAATGACCCCGACAACGAGGACTTTGAGACTATTGAGCAGGAGGTGTTCTTAGGGAA CATTCCGTATATGACCGAGAAAGGCTCGTTTGTCATCAACGGAGCCGAACGTGTGATTGTTTCTCAATTGCACCGTTCGC CAGGGGTGTTCTTTTCAATGAGCAAACACACGAATGGGACCAAGCTGTATTCAGCGCGGATTATTCCATTCAAAGGCTCA TGGATCGAATTCTCAACCGACGTTAATAATGTCATGTACGCGTACATCGACCGGAAAAAGAAGTTCCCGGTTACTACGCT TTTACGTGCTATCGGCTTCGGTTCGGATAAGGACATTCTTGACCTGTTCGGTTTATCGGAAGAAGTACCGGCAACGCCTG CCAACCTGAAAAAGGCCATTGGCCGTCGGTTAGCGGCTCGGGTACTGCGCACGTGGACGGAAGACTTTGTGGATGAAGAT ACGGGCGAAGTAGTATCAATCAGCCGGAACGAGGTGCTCCTGGAGCGCGACTCGGCCATTTCGGCGGATGACATTGATGT AATTACGGAATCAGGTCAGAAATCAGTCATCCTGCACAAGGAAGACATGAATATGGCCGATTACAACATTATTTACAACA CGCTGCAGAAAGATAGCTCCAACTCTGAAAAAGAGGCTGTGGAGCAAATCTATCGGCAGCTTCGGAACGCTGATGCACCT GACGAGCAAACCGCTCGGGAGATCATCCAAAGCTTGTTCTTCTCGGATAAGCGGTATGACCTTGGTGATGTAGGCCGTTA CCGGATCAACAAAAAACTCGGTCTTGACATTTCGTCGGACATGAAAGTACTGACCACAGAAGACATTGTGTCGATTGTGA AGTACCTGATTGGTCTGATCAACTCAAAGGCCGTTGTCGATGACATTGACCACCTCAGCAACCGACGTGTTCGGACAGTA GGGGAGCAATTATATGCACAGTTCGGCGTCGGTCTGGCTCGTATGGCCCGGACGATTAAAGAACGGATGAACGTACGGGA CAACGAGGATTTTAAACCTGTTGACCTGATCAATGCCCGGACGCTTTCGTCGGTCATTAACTCGTTCTTCGGTACTAACC AGCTGTCGCAGTTTATGGACCAGACCAATCCGCTGGCCGAAGTGACGCACAAGCGTCGTATGTCGGCACTCGGGCCCGGT GGTCTGTCGCGTGAGCGGGCTGGTTTCGAAGTTCGTGACGTACACTACACGCACTACGGTCGTCTGTGTACTATCGAAAC GCCGGAAGGTCCAAACATTGGTCTGATCTCGTCGCTTTGCGTCTATGCTAAAATCAATAGCATGGGCTTCATTGAGACGC CGTACCGGATCATTGAAAACGGAAAGGTATCGATGGATAAGCCGGTCATGTATCTGACAGCTGAAGAAGAAGATACCCAT TACATTGCCCAGGCCAACGCAGGCATCGACAAGAAAGGTAATTTTCAGGTAGATCGCCTGAAAGCCCGTTTTGAAGGTGA CTTCCCAATGGCTGAACCGGCTAACGTAACCTTTATGGATATCGCCCCGAACCAGATTGTATCGGTGGCAGCTTCCATGA TCCCGTTCCTTGAGCACGACGATGCTAACCGCGCCCTGATGGGTTCGAACATGCAGCGTCAGGCAGTGCCGCTCCTTCGT CCTGAAGCCCCAATCGTGGGTACAGGTCTGGAAGGCCGCGTTGCTGTTGACTCGCGTACACTGGTTATTGCTGAAGCCGA TGGTGTTATTGAGTTTGTTGACTCAACCAAAATCATCGTTAAGTACAACCTCGACGAAGATCAGATGGCGGTTACCTTCG ATGAAGATCGGAAAACGTACAACCTCATCAAATTCCGGCGGACAAACCAGGATACATGCATCAACATCAAACCAACTGTA CTGAAAGGGCAGCGGGTGAAGAAAGGTGATGTACTGTGCGAAGGCTATGCCACGCAGGCTGGCGAGCTGGCTTTGGGCCG GAACATGAAAGTAGCGTTCATGCCCTGGCAGGGATATAACTTTGAGGATGCTATCGTGATTTCGGAGCGCGTTGTGCGTG AAGATATCTTCACCTCAATTCACATTGAAGAGTTTGAACTGGAAGTTCGTGACACCAAGCGGGGCGAAGAGGAATTAACC TCCGAAATCCCGAACGTAAGCGAAGAAACGGTTCGTAACCTCGATGAGAACGGTATCGTTCGCGTGGGTACGGAAGTGAA GGAAGGCGATATACTGATCGGTAAGATTACACCGAAAGGCGAAAGCGATCCAACACCGGAAGAAAAACTTCTCCGTGCTA TTTTCGGTGATAAAGCCGGCGACGTGAAAGATGCTTCCAAAAAAGCACCGCCATCCCTCAAAGGTGTCGTTATTGATACC AAGTTGTTTGCCCGTCCGGCCAAAGAAGACCGGGGTAAGCACAAAGACGAGGTTAAAGCACTGATGAAAAAATACGGCCG TGAGTTGAATGACTTCCGTGCCCGTATGATTGAGAAGCTGGTCGCTTTGCTGGATGGTAAAACCAGCGCGGGTGTCAAAC ACAAGTTTGGCGATGAAATTGTGAGCAAGGGTGTGAAGTTCAGCCGTAAGAATATTACGGAAAACCTCTTCCCCGATCGC AATGCCTACCGCGATGAAAGCAGTTACGCTGTGCCGGAAGAAGCCAACCTGTTGTCGGACATGAACCTTGAAGGTTGGAC GGACGATGAGAAGGTGAACATGATGGTTGTCGAACTGGTGAAGAGCTACAACAACCGTCGTAGCGAAATCACGGGTCGGT TCAAGCGTGAACGGTTTACCCTCGAAGTTGGTGACGAATTACCAGCCGGTATCGTGAAGCTGGCCAAAGTTTATATCGCC AAGAAGCGGAAGCTGAAAGTAGGGGATAAAATGGCCGGTCGCCATGGTAACAAAGGGGTTGTTGCCCGGATTGTGCGGGA TGAAGACATGCCGTTCCTGGAAGATGGAACGAAAGTGGACATCGTGCTTAACCCGCTTGGTGTACCTTCCCGGATGAACC TCGGCCAAATCTATGAAACTGTACTGGCCTGGGCTGGTCAGAAACTGGATCGGAAGTATGCAACGCCAATTTTCGATGGC GCAACGGAGCAACAAGTAGCAGACGAGTTGAATGAAGCCGGTTTGCCTTCATTCGGCCGTACATACCTCTACAACGGACT AACGGGTGATCGTTTCGACCAGCCGGTAACCGTAGGTATCATCTACATGCTTAAACTCGGCCACTTGGTCGACGATAAGA TGCACGCCCGTTCGATCGGACCCTACTCGCTCATTACACAGCAGCCGCTGGGTGGTAAGGCGCAGTTTGGTGGTCAGCGT TTCGGTGAGATGGAAGTGTGGGCGCTGGAAGCCTTCGGTGCTTCGAACATCCTGCAGGAAATTCTGACCGTAAAATCGGA TGACGTTGTTGGTCGTGCGAAGGCATACGAGGCTATCGTAAAAGGTGAGAACCTGCCGAAGCCAAACATTCCGGAGTCGT TCAACGTACTCGTACACGAGTTGCGCGGTCTTGCACTTGAAATTACACTTGAATAA Protein sequence : MIGYPDFLDIQVKSFKDFFQLDTPSNQRSEEGLFKVFQENFPISDSRENFKLEFIDYLVDPPKYSVDESIDRGLTYSVPL KAKLRLTNNDPDNEDFETIEQEVFLGNIPYMTEKGSFVINGAERVIVSQLHRSPGVFFSMSKHTNGTKLYSARIIPFKGS WIEFSTDVNNVMYAYIDRKKKFPVTTLLRAIGFGSDKDILDLFGLSEEVPATPANLKKAIGRRLAARVLRTWTEDFVDED TGEVVSISRNEVLLERDSAISADDIDVITESGQKSVILHKEDMNMADYNIIYNTLQKDSSNSEKEAVEQIYRQLRNADAP DEQTAREIIQSLFFSDKRYDLGDVGRYRINKKLGLDISSDMKVLTTEDIVSIVKYLIGLINSKAVVDDIDHLSNRRVRTV GEQLYAQFGVGLARMARTIKERMNVRDNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQTNPLAEVTHKRRMSALGPG GLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVYAKINSMGFIETPYRIIENGKVSMDKPVMYLTAEEEDTH YIAQANAGIDKKGNFQVDRLKARFEGDFPMAEPANVTFMDIAPNQIVSVAASMIPFLEHDDANRALMGSNMQRQAVPLLR PEAPIVGTGLEGRVAVDSRTLVIAEADGVIEFVDSTKIIVKYNLDEDQMAVTFDEDRKTYNLIKFRRTNQDTCINIKPTV LKGQRVKKGDVLCEGYATQAGELALGRNMKVAFMPWQGYNFEDAIVISERVVREDIFTSIHIEEFELEVRDTKRGEEELT SEIPNVSEETVRNLDENGIVRVGTEVKEGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASKKAPPSLKGVVIDT KLFARPAKEDRGKHKDEVKALMKKYGRELNDFRARMIEKLVALLDGKTSAGVKHKFGDEIVSKGVKFSRKNITENLFPDR NAYRDESSYAVPEEANLLSDMNLEGWTDDEKVNMMVVELVKSYNNRRSEITGRFKRERFTLEVGDELPAGIVKLAKVYIA KKRKLKVGDKMAGRHGNKGVVARIVRDEDMPFLEDGTKVDIVLNPLGVPSRMNLGQIYETVLAWAGQKLDRKYATPIFDG ATEQQVADELNEAGLPSFGRTYLYNGLTGDRFDQPVTVGIIYMLKLGHLVDDKMHARSIGPYSLITQQPLGGKAQFGGQR FGEMEVWALEAFGASNILQEILTVKSDDVVGRAKAYEAIVKGENLPKPNIPESFNVLVHELRGLALEITLE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 45 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Slin_4477 | YP_003389256.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 46 |
| Slin_4477 | YP_003389256.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 46 |
| Slin_4477 | YP_003389256.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 46 |
| Slin_4477 | YP_003389256.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 46 |
| Slin_4477 | YP_003389256.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 45 |
| Slin_4477 | YP_003389256.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 45 |
| Slin_4477 | YP_003389256.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 45 |
| Slin_4477 | YP_003389256.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 45 |
| Slin_4477 | YP_003389256.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 45 |
| Slin_4477 | YP_003389256.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 45 |
| Slin_4477 | YP_003389256.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 45 |
| Slin_4477 | YP_003389256.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 45 |
| Slin_4477 | YP_003389256.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 45 |
| Slin_4477 | YP_003389256.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 45 |
| Slin_4477 | YP_003389256.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 45 |
| Slin_4477 | YP_003389256.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 45 |
| Slin_4477 | YP_003389256.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 44 |
