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Name : rpoB (LLO_0479) Accession : YP_003453961.1 Strain : Legionella longbeachae NSW150 Genome accession: NC_013861 Putative virulence/resistance : Unknown Product : RNA polymerase B-subunit Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 550477 - 554583 bp Length : 4107 bp Strand : + Note : equals llo0479 DNA sequence : ATGGCCGTTGCAGAAGCTAAACCTCAATATTCGCATGCTGAGAAAAAACGATTTCGCAAAAGCTTTGGTAAGCAGGCCGA TAAAATGGCAATACCAAATCTGCTTGAAATTCAATTAAAATCTTATAGGGATTTCCTTCAGGCCGATAGCAAAGCAAATG AACACTTTAATACAGGATTACATGCTGCATTTTCTTCAGTGTTCCCAATTGATAGTTTTTCTGGCAATGCAAGACTTGAA TATGTTGGCTATAAGCTTGGTGAACCAGCATTTGATGTGCGCGAATGCAAATTAAGAGGCTTAACTTATTCTGCACCATT AAGGGTTAAAATAAGACTTGTTATTCTTGATAAAGATGCAAGCGAAGATCCTAAGCCAATCAAAGATATTAGAGAACAAG ATGTATTTATGGGTGAAATACCTTTAATGACCGATGTTGGGACGTTTGTCATAAATGGCACCGAAAGAGTAGTTGTCTCT CAATTACATCGTTCACCTGGTGTCATATTTGAACATGACAAGGGTAAAACCCATTCATCTGGAAAATTACTCTATTCTGC ACGAATTATTCCATATAGAGGCTCATGGCTAGATTTTGAGTTCGATCCTAAAGATTGTGTTTATGTCCGAATTGACAGGA GACGTAAACTACCGGTTAGCATTTTGCTACGGGCATTAGGCTATGAAACAGAAGATATTCTGGGCGAGTTTTTTGAAATG ACAAGCTGTCATCTTAAAAATGGCGAATATCATATAGATTTAATTCCCCAACGCCTACGAGGCGAAATAGCATCTTTTGA TATTCTTGTGCCTGGAACAGGTGAGCTTATTGTTGAGCAAGGACGAAGAATCACTGCGCGTCATATTAAACAAATGGAAA AGGCGCAGATGAAAGATCTCATTGTGCCTCGAGATTATTTAATAGGCAAAACGTTAGCAAAAAATATTATTGATACCTTA ACTGGCGAGTTGGTTGCACAAGCAAATGATGAAGTCACAGAAGATTTACTCGATGCAATGATCACAAGTGGTATTCATGA ATTTGATATGATTTATACCAATGATTTAGATCATGGTTCTTATATTTCTGATACAGTAAAGATCGATCCAACTTCGAGTC AACTAGAAGCTCTTGTGGAAATATACCGCATGATGCGTCCTGGTGAGCCACCAACAAAGGAAGCTGCAGAGGCGTTATTT AAAAATCTGTTTTTTGTAGAAGAGCGATATGATCTATCAGCAGTAGGTAGGATGAAGTTTAATCGCCGTGTTGGTCGAAA GAATGATGATGGTCCGGGAACATTGACCAAAGAAGACATAATGGCAGTTATCAAGACATTAATTGACATTAGGAACGGTA TTGGAATGGTCGATGATATCGATCATCTTGGCAACCGTAGAGTTCGTAGCGTTGGTGAAATGACTGAAAACCAATTTAGA GTTGGTCTTGTACGCGTTGAAAGAGCAGTTAAAGAGCGATTGAGTTTAGTTGAATCTGAAAATTTAATGCCTCAAGATTT AATTAATGCAAAACCGGTTTCTGCTGCGATTAAGGAATTTTTTGGTTCAAGTCAGTTATCTCAATTTATGGATCAAGTAA ATCCACTATCAGGTGTAACGCATAAGCGCAGGGTATCAGCTTTGGGCCCAGGTGGATTGACTCGAGAGCGTGCTGGCTTT GAAGTCCGTGACGTACATACCACCCACTATGGACGAGTATGTCCAATTGAAACGCCAGAAGGCCCAAACATTGGTTTGAT TAACTCATTATCTGTTTATGCGCGAACAAATGATTATGGTTTTATTGAAACTCCATGCCGAAAAGTAATTGAGGGCCGTG TTACAGATGAAATTGAATATTTATCAGCTATCGAAGAAGTAGACCAATATATCGCTCAATCAAGTGTAGCTCTTGACGAG GATGGAAATATTTTAGCTGATTTGGTTCCTTGTAGACATCAAAATGAGTTCTCACTGACTACTCCAGATAAGATTAACTA CATGGACATTTCGCCCAAACAGATTGTATCTGTAGCGGCTTCTTTGATTCCCTTCCTGGAGCATGACGACGCAAACCGTG CTTTAATGGGATCAAACATGCAACGCCAGGCAGTTCCTACATTGCGGTCAGAAAAGCCATTGGTAGGTACTGGTATGGAG CGCATCGTTGCATCAGACTCAGGGGTTTCTGTAGTAGCAAAACGTGGAGGAGTAATCGATCTAGTTGATGCTTCACGTAT TGTTGTACGTGTGAATGATGATGAAACAACGGCTGGTGAAACAGGCGTTGATATATATAATTTAACCAAATATTTTCGTT CAAACCAAGATACTTGTATCAATCAACGCCCTATTGTAAAAACAGGCGACATGATTCAAAGAGGCGATGTTTTAGCTGAT GGTCCCTGTACCGATATGGGGGAACTTGCTTTAGGGCAAAATTTATTAGTTGCATTTATGCCATGGAATGGATACAACTT CGAAGACTCTATTCTTATTTCTGAGCGTATTGTTCAAGATGATCGTTTTACAACTATTCACATAGAAGAACTGACATGTA TTGCTCGAGATACTAAATTGGGAGCAGAGGAAATAACTGCGGATATACCCAATGTAGGTGAATCAGCACTTTCTAGTTTG GATGAATCAGGTGTTGTATATATTGGTGCAGAAGTTAATGCTGGGGATATATTAGTAGGAAAGGTAACACCTAAAGGTGA AACTCAACTTACCCCGGAAGAAAAATTATTAAGGGCTATCTTTGGCGAAAAAGCATCTGATGTTAAAGATTCTTCATTAC GAGTCCCATCAGGTATGAATGGTACTGTAATTGACGTACAAGTATTCACGCGTGATGGATTGGAAAAGGATGCACGTGCA AAGAGCATTGAAGAAGAGCATCTTGCTCGAGTACGTAAAGATCTTGTTGATGAGCGTCGTATTCGTGAGGAAGATATTTA TCATCGTGTATCAAATATTATTCTTGACAAGGTTGCTACAGGTGGCCCAGGTAATTTGAGACCTGGTTCAAAAGTAACAC AAGAATATTTACAAAGTATAACTAGAGACAAATGGTTCGATATTCGTTTAGAAAATGACACAACAAGTCAGCAATTAGAA CAGCTTTCCAAGCAGCTGGAAATGCTGACTAAAGAGATGGAAAAGCGCTTTAATGATAGCAGAAAGAAAATTATTCAAGG CGATGATTTAGCTCCTGGCGTATTGAAAATCGTTAAGGTATATCTTGCTGTTAAACGAAGAATCCAACCTGGTGATAAAA TGGCTGGACGCCATGGTAACAAAGGGGTTATCTCTATTGTTGTACCAGTAGAAGATATGCCTCATATGGAAGATGGTACA GCTGTAGATATCGTATTAAATCCATTAGGCGTACCTTCGCGTATGAATATTGGACAGGTATTAGAAACACATCTTGGTTT AGCTGCTAAAGGATTAGGAAATAAAATCTCTCAAATGTTGGATTTAAAGCAGAATGCTACTGAAATTCGAACTTTCTTGA ATAAAATATATAATCACGATGGCATACAAAGAGTAAATCTCGATTGCCTAAATGATGAAGAGCTGTATCGCTTGGCAGAT AATTTGCGTGCTGGCGTGCCAATGGCTACTCCTGTTTTTGATGGGGCCTCTGAAGCAGAAATAAAAAGCATGCTGCAACT GGCCGATCTATCACCTGATGGAAAAACTGTTTTATATGATGGTAGAACAGGTAATCGATTTGATAATCCGGTAACAGTCG GATACATGTATATGCTAAAACTAAACCATCTGGTTGATGATAAAATGCATGCTCGCTCTACTGGTTCCTACAGCCTGGTA ACACAACAGCCACTTGGCGGTAAAGCCCAGTTTGGAGGACAACGCTTTGGAGAAATGGAAGTATGGGCACTTGAAGCATA TGGCGCAGCTTATACATTACAGGAAATGTTGACTGTAAAATCAGATGACGTTGGAGGTAGAACAAAAATCTACAAAAATA TAGTCGATGGAGACCATCGCATGGATCCGGGAATGCCTGAATCTTTCAACGTACTATTGAAAGAAATCCGTGCTTTGGGA ATAGATATAGAACTCGAACACGATTAA Protein sequence : MAVAEAKPQYSHAEKKRFRKSFGKQADKMAIPNLLEIQLKSYRDFLQADSKANEHFNTGLHAAFSSVFPIDSFSGNARLE YVGYKLGEPAFDVRECKLRGLTYSAPLRVKIRLVILDKDASEDPKPIKDIREQDVFMGEIPLMTDVGTFVINGTERVVVS QLHRSPGVIFEHDKGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDCVYVRIDRRRKLPVSILLRALGYETEDILGEFFEM TSCHLKNGEYHIDLIPQRLRGEIASFDILVPGTGELIVEQGRRITARHIKQMEKAQMKDLIVPRDYLIGKTLAKNIIDTL TGELVAQANDEVTEDLLDAMITSGIHEFDMIYTNDLDHGSYISDTVKIDPTSSQLEALVEIYRMMRPGEPPTKEAAEALF KNLFFVEERYDLSAVGRMKFNRRVGRKNDDGPGTLTKEDIMAVIKTLIDIRNGIGMVDDIDHLGNRRVRSVGEMTENQFR VGLVRVERAVKERLSLVESENLMPQDLINAKPVSAAIKEFFGSSQLSQFMDQVNPLSGVTHKRRVSALGPGGLTRERAGF EVRDVHTTHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFIETPCRKVIEGRVTDEIEYLSAIEEVDQYIAQSSVALDE DGNILADLVPCRHQNEFSLTTPDKINYMDISPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSEKPLVGTGME RIVASDSGVSVVAKRGGVIDLVDASRIVVRVNDDETTAGETGVDIYNLTKYFRSNQDTCINQRPIVKTGDMIQRGDVLAD GPCTDMGELALGQNLLVAFMPWNGYNFEDSILISERIVQDDRFTTIHIEELTCIARDTKLGAEEITADIPNVGESALSSL DESGVVYIGAEVNAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPSGMNGTVIDVQVFTRDGLEKDARA KSIEEEHLARVRKDLVDERRIREEDIYHRVSNIILDKVATGGPGNLRPGSKVTQEYLQSITRDKWFDIRLENDTTSQQLE QLSKQLEMLTKEMEKRFNDSRKKIIQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISIVVPVEDMPHMEDGT AVDIVLNPLGVPSRMNIGQVLETHLGLAAKGLGNKISQMLDLKQNATEIRTFLNKIYNHDGIQRVNLDCLNDEELYRLAD NLRAGVPMATPVFDGASEAEIKSMLQLADLSPDGKTVLYDGRTGNRFDNPVTVGYMYMLKLNHLVDDKMHARSTGSYSLV TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVGGRTKIYKNIVDGDHRMDPGMPESFNVLLKEIRALG IDIELEHD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 69 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 69 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_003453961.1 | RNA polymerase B-subunit | CP000675.2.gene392.p | Protein | 0.0 | 93 |
| rpoB | YP_003453961.1 | RNA polymerase B-subunit | NC_002516.2.881699.p | Protein | 0.0 | 73 |
| rpoB | YP_003453961.1 | RNA polymerase B-subunit | CP000034.1.gene3741. | Protein | 0.0 | 70 |
| rpoB | YP_003453961.1 | RNA polymerase B-subunit | CP001918.1.gene250.p | Protein | 0.0 | 70 |
| rpoB | YP_003453961.1 | RNA polymerase B-subunit | CP004022.1.gene2794. | Protein | 0.0 | 70 |
| rpoB | YP_003453961.1 | RNA polymerase B-subunit | NC_002695.1.914942.p | Protein | 0.0 | 70 |
| rpoB | YP_003453961.1 | RNA polymerase B-subunit | CP001138.1.gene4362. | Protein | 0.0 | 70 |
| rpoB | YP_003453961.1 | RNA polymerase B-subunit | CP000647.1.gene4402. | Protein | 0.0 | 70 |
| rpoB | YP_003453961.1 | RNA polymerase B-subunit | NC_009085.4918494.p0 | Protein | 0.0 | 70 |
| rpoB | YP_003453961.1 | RNA polymerase B-subunit | NC_011595.7060572.p0 | Protein | 0.0 | 69 |
| rpoB | YP_003453961.1 | RNA polymerase B-subunit | NC_010410.6003841.p0 | Protein | 0.0 | 69 |
| rpoB | YP_003453961.1 | RNA polymerase B-subunit | NC_011586.7046027.p0 | Protein | 0.0 | 69 |
| rpoB | YP_003453961.1 | RNA polymerase B-subunit | NC_010400.5987325.p0 | Protein | 0.0 | 69 |
| rpoB | YP_003453961.1 | RNA polymerase B-subunit | NC_010611.6233925.p0 | Protein | 0.0 | 69 |
| rpoB | YP_003453961.1 | RNA polymerase B-subunit | NC_008702.1.4609796. | Protein | 0.0 | 67 |
| rpoB | YP_003453961.1 | RNA polymerase B-subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 66 |
| rpoB | YP_003453961.1 | RNA polymerase B-subunit | NC_011035.1.6448762. | Protein | 0.0 | 65 |
