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Name : TK90_2176 (TK90_2176) Accession : YP_003461402.1 Strain : Thioalkalivibrio sp. K90mix Genome accession: NC_013889 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 2288013 - 2292092 bp Length : 4080 bp Strand : - Note : KEGG: aeh:Mlg_0451 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 2; DNA-directed RNA polymerase subunit beta, exter DNA sequence : ATGGCCCTCAGTTATACCGAAAAGAAACGTATCCGCAAGGACTTCGGGAAACGTCCCCAGATCCTGGACGTCCCGTATCT GCTGGAAACCCAATTGACCTCCTATCGGGATTTCCTGCAGGCCGAAAAGGGTCCGGAGGCGCGTCACGCGTTGGGCCTGC ACGCGGCGTTTCAGTCGGTGTTCCCGATTGTTAGCTATTCCGGTCATGTCCAGCTCGAGTACGTCAGCTACCGCTTGGGC GAGCCGCTGTTCGATGTGAAGGAATGCCAGATCCGTGGCGTGACTTACGCGGCCCCGCTGCGTGTCCTGCTGCGTCTGGT GATCCACGACAAGGAGGCCCCGGCCGGCTCCACCGTGGTGAAGGAGGTCAAGGAGCAGGAGGTCTACATGGGCGAGATGC CGCTCATGACCGAGAACGGGACCTTCGTGATCAACGGTACCGAGCGAGTGATCGTCTCCCAGTTGCATCGTTCGCCCGGC GTGTTCTTCGACAGCGACCGTGGCAAGACCCAGGGCAGCGCCCAGAAGCTGCTCTACAACGCACGCATTATTCCGTACCG CGGTTCCTGGCTGGACTTCGAGTTCGATGCCAAGGACGGGGTGTACGTGCGTATCGACCGTCGCCGCAAACTGCCGGCGT CGATTCTGCTGCGTGCGCTGGGCATGGATACCGAAGAGATCCTGTCCACCTTTTTTGAATTCAACCAGATCACGCTCGAT GAAGACGGCGGTGAACTGGACCTGATCCCCGAGCGCCTGCGCGGCGAGACCGCCGTGGTCGACATCACCGACGGCAAGAA CGTGATCGTCGAGGCCGGGCGCCGGATTACCCCGCGGCATATCCGCGAGATCGAAAAGGCCGGCATCAACCGCCTGCGCG TGCCGGACGAGTACCTGCTCGGCCGCGTGCTGGCCAAGGGCGTAGTCGACGAGTCGACCGGCGAGCTGATGGCGGCCGCC AACGATCCGCTGACCCAGGAACTCCTGGACAAGCTGCGCGCCGAGGGCGTGAAGTCGGTGGAGACCATCTACACCAACGA CTATGACCATGGCCCGTTCATGTCGGACACCCTGCGTCTGGATCCGACCAAGACGCAGTTGGAGGCCCAGGTCGAGATCT ATCGCGTGATGCGCCCCGGCGAGCCGCCGACCAAGGACGCCGCCGAGAACCTGTTCTCCAACCTGTTCTTCTCCGAGGAC CGCTACGACCTGTCGGCCGTCGGCCGGATGAAGTTCAACCGCCGTGTCGGACGCGATACCGACGAGGGCCCGGGTGTGCT GTCGCCCGAGGACATCCTCGACGTGCTGAAGGTCCTGATCGACCTGCGTAACGGCAACGGTCGCACCGACGATATCGATC ACCTGGGCAACCGCCGCATCCGCAGCGTGGGCGAGATGGCCGAGAACCAGTTCCGTCTGGGTCTGGTGCGCGTCGAGCGT GCGGTCAAGGAGCGCCTGACGGTCGCCGAGAGCGAAGGCCTGATGCCGCAGGAGCTGATCAACGCGAAGCCGGTGGCGGC CGCGGTCAAGGAGTTCTTCGGTTCCAGTCAGCTGTCGCAGTTCATGGACCAGAACAATCCGCTGTCCGAGGTGACTCACA AGCGCCGTATCTCCGCGCTGGGCCCGGGCGGCCTGACCCGCGAACGCGCGGGCTTCGAGGTGCGCGACGTACACCCGACC CACTACGGTCGTGTCTGCCCGATCGAGACGCCGGAAGGTCCGAACATCGGCCTGATCAACTCGCTGGCCGTGTATGCCCG CACCAACCGTTACGGCTTCCTGGAGACCCCGTACCGCAAGGTCGAGGACGGCAAGGTCACCGATGAGATCGTGTATCTGT CCGCGATCGAGGAAAGCCAGTACGTGATCGCCCAGGCGAATGCGGCGATGGACGAGCAAGGGCGTCTGACCGACGACCTG GTCTCCTGCCGCTTCCAGGAGGAGTTCACGATCTCCTCGCCGGACAAGATCCAGTACATGGATATCTCGCCGAAGCAGAT CGTGTCCGTGGCGGCCGCGCTGCTGCCGTTCCTGGAGCATGACGATGCCAACCGCGCCCTGATGGGTGCGAACATGCAGC GTCAGGCGGTGCCCTGCCTGCGTGCGGACAAGCCGCTGGTCGGGACCGGTATCGAACGCACCGTGGCGATCGACTCCGGG TCCGCGATTGTCGCCAAGCGCGGCGGTACGGTCGATTCCGTGGACGCCGCCCGCGTGGTGGTGCGCGTGAACGACGACGA GACCGTCGCCGGCGAGCCAGGCGTGGATATCTACAACCTGACCAAGTACTCGCGTTCCAACCAGAACACCAGCATCAACC AGCGTCCGCTGGTCGCGGTGGGCGACGAGATCGCCCGCGGCGACGTGCTGGCCGATGGGTCCTCGACCGATCTCGGCGAG CTGGCCCTGGGGCAGAACATGATGGTCGCGTTCATGCCCTGGAACGGCTACAACTTCGAGGATTCCATCCTGATCTCCGA GCGCGTGGTGCAGGAAGACCGCTACACCACGATCCATATCGAGGAGCTCAACTGTGTCGCGCGTGACACCAAGCTGGGCC AGGAAGAGATCACCGCGGATATCCCGAACGTCTCCGAGTCGCTGCTGGCCAAGCTGGACGAGTCCGGTGTGGTCTATGTC GGTGCCGAGGTGAACCCGGGCGACATCCTGGTGGGCAAGGTCACGCCGAAGGGCGAGACCCAGCTGACCCCGGAAGAGAA GCTCCTGAGGGCCATCTTTGGCGAGAAGGCCTCGGACGTGAAGGACACCTCCCTGCGTGTGCCGTCCGGCATTGAGGGCA CGGTGATCGACGTACGCGTGTTCACCCGCGACGGCGTGGAGAAGGACGCGCGCGCCAAGTCGATCGAGGAAGACGACCTC GCCGCGGTCAAGAAGGACCTGAAGGACCAGCTGCGTATCTACGAGGACGACATCTACGCACGAGTGGAAAAGCTGCTGGT CAACAAGGCCGCCGCCGGTGGTCCCGAAGGGCTGGGCGATGGCTCCAAGGTCACCAAGAAGTACCTGCAGGGACTGTCCC GCGACCAGTGGTTCGAGGTGCGCCTGAAGGACGACGCCGTGAACTCTCAGCTGGAGGACCTCGGTCGCCAGCTGCAGGAG CAGCACGAGCTGTTCGACAAGAAGTTCGAGCACCAGAAGGCGAAGGTTGCCGCGGGCGACGACCTGCCGCCGGGCGTGCA GAAGATGGTCAAGGTCTACGTGGCCGTGAAGCGTCGTCTGCAGCCGGGCGACAAGATGGCCGGCCGCCACGGGAACAAGG GCGTCATCTCGATGATCGTGCCGGAAGAGGACATGCCGTTCCTCGAGGACGGGACCCCGGTGGACGTGGTCCTGAACCCA CTGGGCGTTCCCTCGCGCATGAACGTCGGGCAGGTGCTGGAGGTTCACCTCGGGTGGGCCGCGAAGGGCCTGGGCGACAA GATCAACCGCATGCTCGAGGCGCAGGCCGAGATCGCGAAGCTGCGCGAGTTCCTGGACAAGATCTACAACCACCGCGACA AGAAGGTCGATCTCGACTCCATGTCGGACGCCGAGATCATTGCGCTTTGCCGCAACCTGCGCGGTGGCGTGCCGATGGCG ACGCCGGTGTTCGACGGTGCCGAGGAGGCCGAGATCAAGGAGATGCTGCGTCTGGCCGATCTGCCCGAGACGGGGCAGGC CGAACTGTTCGACGGGCGCACCGGTGACTCCTTCGATCGTCCGGTGACCGTCGGCTACATGCACATGCTGAAGCTGAACC ACCTGGTCGACGACAAGATGCATGCGCGCTCGACCGGCCCGTACTCGCTGGTGACCCAGCAGCCGCTGGGCGGCAAGGCG CAGTTTGGTGGCCAGCGCTTCGGCGAGATGGAGGTCTGGGCGCTGGAGGCCTACGGCGCTGCCTACACCCTGCAGGAGAT GCTGACGGTGAAGGCGGACGACGTGCAGGGCCGCAACAAGATGTACAAGAACATCGTCGACGGCGAGCACCACATGGAGG CCAACGTCCCCGAGTCGTTCAACGTGCTTATGAAGGAGATCAAGGCGCTCGGCATCAATATCGAGCTGGAGCAGGACTGA Protein sequence : MALSYTEKKRIRKDFGKRPQILDVPYLLETQLTSYRDFLQAEKGPEARHALGLHAAFQSVFPIVSYSGHVQLEYVSYRLG EPLFDVKECQIRGVTYAAPLRVLLRLVIHDKEAPAGSTVVKEVKEQEVYMGEMPLMTENGTFVINGTERVIVSQLHRSPG VFFDSDRGKTQGSAQKLLYNARIIPYRGSWLDFEFDAKDGVYVRIDRRRKLPASILLRALGMDTEEILSTFFEFNQITLD EDGGELDLIPERLRGETAVVDITDGKNVIVEAGRRITPRHIREIEKAGINRLRVPDEYLLGRVLAKGVVDESTGELMAAA NDPLTQELLDKLRAEGVKSVETIYTNDYDHGPFMSDTLRLDPTKTQLEAQVEIYRVMRPGEPPTKDAAENLFSNLFFSED RYDLSAVGRMKFNRRVGRDTDEGPGVLSPEDILDVLKVLIDLRNGNGRTDDIDHLGNRRIRSVGEMAENQFRLGLVRVER AVKERLTVAESEGLMPQELINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPT HYGRVCPIETPEGPNIGLINSLAVYARTNRYGFLETPYRKVEDGKVTDEIVYLSAIEESQYVIAQANAAMDEQGRLTDDL VSCRFQEEFTISSPDKIQYMDISPKQIVSVAAALLPFLEHDDANRALMGANMQRQAVPCLRADKPLVGTGIERTVAIDSG SAIVAKRGGTVDSVDAARVVVRVNDDETVAGEPGVDIYNLTKYSRSNQNTSINQRPLVAVGDEIARGDVLADGSSTDLGE LALGQNMMVAFMPWNGYNFEDSILISERVVQEDRYTTIHIEELNCVARDTKLGQEEITADIPNVSESLLAKLDESGVVYV GAEVNPGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGIEGTVIDVRVFTRDGVEKDARAKSIEEDDL AAVKKDLKDQLRIYEDDIYARVEKLLVNKAAAGGPEGLGDGSKVTKKYLQGLSRDQWFEVRLKDDAVNSQLEDLGRQLQE QHELFDKKFEHQKAKVAAGDDLPPGVQKMVKVYVAVKRRLQPGDKMAGRHGNKGVISMIVPEEDMPFLEDGTPVDVVLNP LGVPSRMNVGQVLEVHLGWAAKGLGDKINRMLEAQAEIAKLREFLDKIYNHRDKKVDLDSMSDAEIIALCRNLRGGVPMA TPVFDGAEEAEIKEMLRLADLPETGQAELFDGRTGDSFDRPVTVGYMHMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKA QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKADDVQGRNKMYKNIVDGEHHMEANVPESFNVLMKEIKALGINIELEQD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 69 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 69 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| TK90_2176 | YP_003461402.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 73 |
| TK90_2176 | YP_003461402.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 72 |
| TK90_2176 | YP_003461402.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 72 |
| TK90_2176 | YP_003461402.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 72 |
| TK90_2176 | YP_003461402.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 72 |
| TK90_2176 | YP_003461402.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 72 |
| TK90_2176 | YP_003461402.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 71 |
| TK90_2176 | YP_003461402.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 71 |
| TK90_2176 | YP_003461402.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 69 |
| TK90_2176 | YP_003461402.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 69 |
| TK90_2176 | YP_003461402.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 69 |
| TK90_2176 | YP_003461402.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 69 |
| TK90_2176 | YP_003461402.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 69 |
| TK90_2176 | YP_003461402.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 69 |
| TK90_2176 | YP_003461402.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 68 |
| TK90_2176 | YP_003461402.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 67 |
| TK90_2176 | YP_003461402.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 66 |
