Gene Information

Name : XBJ1_1094 (XBJ1_1094)
Accession : YP_003467023.1
Strain : Xenorhabdus bovienii SS-2004
Genome accession: NC_013892
Putative virulence/resistance : Virulence
Product : RTX toxin secretion ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG2274
EC number : 3.6.3.43
Position : 1103967 - 1106129 bp
Length : 2163 bp
Strand : +
Note : Evidence 6 : Doubtful CDS; PubMedId : 9927695; Product type e : enzyme

DNA sequence :
ATGGTTGACGCATTTTCCTTTACGAGTGATACAGACACGGAAGATCACACCAATAATCACGCACTGGATTGTGTCGCCTA
TCTGGGAACACAATTTCATAAGGTTGCCTCCGTCAGACAATTGCATCATGCGCTGGGTCTGGATTCCCTGACGCTGACAG
ACTGGCAGCTACGCGAAGCTATCGATGCCGTAGGCCTGCACAGCAAATTTGATCGTCTGACAGCCGATACCGCAGCCACG
TTGCCTTTACCGGCACTGATTGAATTGGGTCAATGCTGGTGGGTGCTGCTCGAAGTCAGCCCAGATCAGTTTACCGTGCT
CAATCCCATCACGGAAAAACAAGAAATACGCCCATTGCACGGCACACAGGCGACACCTGACGAAGCTAAACACAGTGAGT
ATAAAATCCTGCTGGTGGCAGATAAATCGCTGACCAAACAGCAAGTCAAATTCGGCTTGAGCTGGTTTTATCCTTCGATT
TTCAGGCAGAAAAATCAGTTGCGGGATATTTTCCTGTTCGCCATTGTGCTGCAACTTTTTGCGCTGGCATCTCCTTTGCT
GTTTGAAAATGTCATCGACAAAGTACTGGTCGGACGCAGCTTATCCAGCCTGCATGTTCTTGGTCTGGCGATGCTGGCGC
TGGCCGTGGCAGAACCCCTGTACGGTTTTCTGCGCAATACCGTGTTCGGACATATGGCAAGCCAGATCAACGCGGAACTC
TCCGGCAGGCTTTATCGCCATCTGGTGGGATTACCCCTGCCCTATTTCAAGCAACGCCAAACCGGACAAATTATCGCGCG
CGTCAGAGAAATGGCACAAATCCGCCAATTTCTGACCGGCTCCACCCTGATGTTGCTACTCGACCTGATCTTCATCATCC
TGTTTCTTGGCGTCATGTTCCATTATTCCACTCTATTGACCGGGATCGTAATCAGTTCGCTGGCACTCTATTTCCTGCTT
TGGATCGCTATTGGACCTCTCATCCGACGCAAAGTAGAAACCGAATATGAAGCCGATGCCCATGCCACCAGTTTCCTGAC
GGAATCCGTCATGGGCATCGAAACTATCAAGACCACCGCAACAGAAAAACGCTTTCTGCGCCAGTGGCAAAAAGTGTTAA
GCCAGCAATTGATCCGGCGTTTTTCCGCCCAGAAAAGTGGGCTTGCGGCCGGACAGGGGATCGCGTTGATCCAGAAAATC
GTAGCGGCATTACTGCTATGGTGGGGGGTCAGAAGCGTTCTTAACGGCGAATTATCCCCCGGAGAGTTAATTGCCTTCAA
TATGCTGGCAGGACACGTCACCCAGCCGATCTTACGGCTGGCGCAAGTCTGGCAGGATTTCCAGCATACTTTGATCGCTT
TGCGACGGGTCGGCGATATTCTTGATGAGCCAATGGAGAGTAGCAAACAGGGGCTGGCAGCTTCCCCTGAACTTGCCGGC
CAGATTGAGTTCAGGAATATTCGCTTCCGCTATCACGCAGATACGCCCGAAGTACTGGCAAATCTGTCACTGACCATCAA
AGCGGGCGAATTTATTGGCATAACGGGGCCATCGGGTTCAGGTAAAAGTACCCTGACCCGGTTGTTACAGCGCCTGTATG
TGCCGCAGCATGGTCAGGTTCTGGTCGATGGTATGGATTTGGCGATCGCCGATCCCGTATCACTCCGACGTAACATGAGC
GTGGTATTGCAGGAAAGCATACTGTTTTCCGGCAGCATTGCGGACAATATCCGTCTGTGTAAACCCAATGCCAGCGATGA
AGAAGTCTACCGGGCGGCGACTTTGGCGGGTGCAACTGACTTCATCAATGAATTTCCGCATAAATTTGCCCATTCTGTCG
GGGAGAAAGGAAGCAATCTTTCCGGTGGGCAACGGCAGCGTATCGCATTGGCAAGAGCCTTGTTGAATGATCCCAAAATC
CTGATTCTGGATGAAGCGACTTCCGCGCTGGATTATGAATCCGAGGCAGCCATTATGAGCAATCTGGACGAGATCCGCCA
CAACCGGACGGTTATCAGCATTGCCCATCGGCTGAATACGATCCGCCATGCAGATAAAATTTTTGTTTTAGATCAAGGAA
CAATCGTCGAATCTGGCTCCCATGATGACCTATTGCAACAAAACGGACTGTATGCACAACTTTGGCATCAACAAACAGAA
TGA

Protein sequence :
MVDAFSFTSDTDTEDHTNNHALDCVAYLGTQFHKVASVRQLHHALGLDSLTLTDWQLREAIDAVGLHSKFDRLTADTAAT
LPLPALIELGQCWWVLLEVSPDQFTVLNPITEKQEIRPLHGTQATPDEAKHSEYKILLVADKSLTKQQVKFGLSWFYPSI
FRQKNQLRDIFLFAIVLQLFALASPLLFENVIDKVLVGRSLSSLHVLGLAMLALAVAEPLYGFLRNTVFGHMASQINAEL
SGRLYRHLVGLPLPYFKQRQTGQIIARVREMAQIRQFLTGSTLMLLLDLIFIILFLGVMFHYSTLLTGIVISSLALYFLL
WIAIGPLIRRKVETEYEADAHATSFLTESVMGIETIKTTATEKRFLRQWQKVLSQQLIRRFSAQKSGLAAGQGIALIQKI
VAALLLWWGVRSVLNGELSPGELIAFNMLAGHVTQPILRLAQVWQDFQHTLIALRRVGDILDEPMESSKQGLAASPELAG
QIEFRNIRFRYHADTPEVLANLSLTIKAGEFIGITGPSGSGKSTLTRLLQRLYVPQHGQVLVDGMDLAIADPVSLRRNMS
VVLQESILFSGSIADNIRLCKPNASDEEVYRAATLAGATDFINEFPHKFAHSVGEKGSNLSGGQRQRIALARALLNDPKI
LILDEATSALDYESEAAIMSNLDEIRHNRTVISIAHRLNTIRHADKIFVLDQGTIVESGSHDDLLQQNGLYAQLWHQQTE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hlyB CAD42038.1 HlyB protein Virulence PAI II 536 Protein 3e-126 49
hlyB NP_755448.1 hemolysin B Virulence PAI I CFT073 Protein 7e-126 49
hlyB CAD33760.1 hemolysin B Virulence PAI I 536 Protein 3e-126 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XBJ1_1094 YP_003467023.1 RTX toxin secretion ATP-binding protein VFG1557 Protein 2e-126 49
XBJ1_1094 YP_003467023.1 RTX toxin secretion ATP-binding protein VFG1501 Protein 2e-126 49
XBJ1_1094 YP_003467023.1 RTX toxin secretion ATP-binding protein VFG0907 Protein 3e-126 49
XBJ1_1094 YP_003467023.1 RTX toxin secretion ATP-binding protein VFG0841 Protein 2e-120 47
XBJ1_1094 YP_003467023.1 RTX toxin secretion ATP-binding protein VFG1269 Protein 9e-124 47