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Name : Dacet_0365 (Dacet_0365) Accession : YP_003503121.1 Strain : Denitrovibrio acetiphilus DSM 12809 Genome accession: NC_013943 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 378812 - 382807 bp Length : 3996 bp Strand : + Note : TIGRFAM: DNA-directed RNA polymerase, beta subunit; KEGG: gme:Gmet_0619 DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 2; RNA polymerase Rpb2 domain 7; RNA polymerase DNA sequence : ATGTATTTGACCAGCAAACCCACCGAGAGACGTAACTTTTCAAGAATTCAGAAGGTTATAGACATCCCTGACCTTATTGA AGTTCAGAGAGATTCATATGTTGATTTCCTTCAGGCCGAATATACACCGGAGACTCGTGTTGTAAAAGGGCTAGAGGAAG TTTTTCGTGAGATTTTCCCAATAACCGATTTTAATGAAACTGCGGTATTGGAGTATATAAGCTATAGTATTGAAAAATAT AAATATACTCCCGGTGAGGCCATTGACCGCAGCACAACCTTCGCTGCGCCGCTTAAGATAAAAGTCAGGCTGGTGACATA TGATGTAAACGAAGAGACCGGCGAAAAAATGGTTGTCTCTGCGAAAGAGTCAGAAGTATATCTTTGCGATATACCTATGA TGACGGACAGAGGTACTTTTGTCATAAATGGTGTTGAAAGGGTTATCGTTAACCAACTCCACCGTTCCCCCGGTATCTTC TTCGAAGATTTGACTGCATCCAAAGGTGTTATGGAAAAACACCTGTTTAGTGCGAGAATAATCCCCTATAGAGGTTCATG GATAGATTTCGACTTCGATTCTAAAAACATCATGTATGTTAGGATCGACAAAAAACGTAAAATACCAGTTACCGTTCTGC TAAAGGCGCTTGGCTATACAGAAAAAGATATTCTTGATACCTATTATACAAAAGAGAAAATAACTTTTGATGAAAGGGAC AGAATCTTCAAAGAATTTAACGAGGACATCATCCTTGGTCTGCGCAACAGCCTTGATATTCTTGATAAAGAAGGCAACGT CGTTGTTAAAGCCAATCATAAGATTACCAAAGCAGCAAGAAAAAGAATGGTAAAAGCAGAGATCGAAAAAATCCCTGTTG CTTTTGAAGACATTGAACATACATTTTTTGCAGAAGATGTTGTAACTCCTGACGGCGAAGTGCTGATAGAGTCTAATACA GCTATAAGCGAAGAAATGTTTGATAAACTTAAAGAGAATAACATCAGAGAATTTCAGGTTCTCTTCATAGACAGACTTAC ATCAGACAGCATTATGCGTGACATCCTTGCTGTTGATAAAGTGAAGACACAGGAAGAAGCTCTTATCGACATATATAAGA AACTTCGCCCCGGCGAGCCTGCAACTGAGGAGACTGCTAAAACTCTCTTTGATAACCTCTTTTTTAACCCGAAAAGATAC GACCTTTCCAAAGTTGGTCGTCTTAAAATAAATAAACGTCTTGGTCTCGATGTAGACCTTGATACAACAACCCTGACTGC TGAGGATATTGTTGAGACTGTGCGTGTTCTTGAGAACATTCGTAAAGGGCTTGATAAAGTAGATGATATAGATCACCTCG GACACAGAAGGGTAAGAGCTGCCGGTGAGCAGCTTCAGAACCATATACGGATCGGACTCTCCAGAATGGAGAAGACAGTT AAAGAGCGGATGAGCATACAGGATGTTGAGGATCTCACTCCTCAGGATCTGCTGAACGCTAAACCACTTTCTGCTTCCAT TAAGGAATTCTTCGGAAGCTACCAGCTTTCACAGTTCATGGATCAGACTAATCCGCTTAGTGAGATCACTCACAAAAGAA GGCTGTCTGCCCTCGGACCTGGTGGTCTTAACCGTGACAGAGCAGGATTTGAAGTGCGTGACGTGCATACGTCTCACTAC GGACGTATCTGCCCTATTGAAACTCCTGAAGGACCGAACATCGGTCTTATCACATCGCTGACTACGTTTGCTAAAGTGAA TGAGTTCGGCTTCATTGAGACACCATACAGAAAAGTACATGACTGTGTTGTTTCAAATGATGTGGTTTATATGTCTGCTA TTGAAGAAGAGGATTACTATGTCGCTCAGGCGAATGCTCCTCTGAACCCTGACGGTACATTCATCAGGGATTTCGTGGCT GCAAGATACCAAGGTGATTCACTCCTCACTGGTAAAGAAAATATCCAGTATATGGATATTTCACCTAAGCAGATAGTTTC AGTTTCCGCCGCGCTTATTCCGTTTCTTGAACACGACGATGCTAACCGTGCTCTGATGGGGTCAAACATGCAGCGTCAGG CTGTTCCTCTTGTCAGAACTGACTCACCTATAGTGGGGACAGGTATGGAAGGGAAAGTTGCTGTTGACTCTGGTGCGGTT ATCACAGCGAAAAGACCGGGAGTTATTGAATATATAGATTCAGCTAAAATTGCAGTCAGATATAAAGACGGAGATGATTT CGGTCTTGATGTCTATGATCTGGTGAAATATAGAAGATCCAACCAGGATACATGTATCAACTATAAGCCTATTGTTAAAC CGGGTGAGAAAGTTGAGCAGGGTGCCATGCTTGCCGGAGGACCAGCCACTGATAATGGTGAGCTTGCTCTCGGTCAGAAC ATGGTTCTCGCATTCATGCCGTGGATGGGTTACAACTATGAGGACTCCATTCTTATCTCTGAAAATGTTGTTAAAGAAGA TAGATATACTTCTATACACATTGAGGAATTCGAGATTGAGGCAAGGGACACTAAGCTTGGACCTGAAGAGATAACTGCGG ACATACCTAACGTGTCTGACGAAGCTTTGAAGGATCTTGACGAAAGCGGAATTATCCGCATCGGTGCGAGAGTTAAGCCC AGAGACATCCTTGTAGGTAAAGTTACACCGAAGGGTGAGACACAGGCGACTCCTGAAGAAAAACTGCTCAGAGCCATTTT CGGTGAGAAGGCAGGAGACGTAAAAGATGCATCTCTGAGAGTTCCGCCAAGTATTACAGGTACTGTTGTTGATGTACAGG TAATGACAAGAAGAGGCATTGAAAAGGACTCAAGAACAGAGATCATCGAAAAAGCTGAGTACGAGTCAATCCAGAAGGAT TATGAAAGAGAGCTGAAAGCACTTGAGAAATCAAGAAATGATCAGATAAGCTCTTTCCTCGTAGGTAAAAAGCTTAAATC AGATTACTCTAATAATGAGATAAGGATTGCTAAAGATACAGAGCTCACCGCCGAGCTCGTTAAAGATTTTCTTTATACAG ACCTTATTCAGATAGAAATAAATGAGCAGAGCGCATTTGAAGCACACATACAATCTGTAAATGGTCAGTATTTTGTAAAA GTGCAGGCCGCAGAGGAATATTTCAGAGATAAAAAGAAAAAAGTTGAGAAGGGCGATGAACTTCCGGCTGGTGTTCTAAA ATCTGTGAAAGTATATGTAGCTATCAAAAGAAAGCTTTCTGTTGGTGACAAAATGGCTGGACGACACGGTAACAAAGGTG TTGTGTCCAGAATCCTCCCAGCAGAAGACATGCCATACCTGCCGGATGGTACACCTGTTGATGTAGTTATGAACCCCCTT GCGGTTCCTTCCCGTATGAACGTTGGACAGGTGCTTGAAGTGCATCTTGGCTGGGCTGGACGTAAGCTCGGAATGAAAGT TGCAACTGAAGTTTTTGACGGAGCCAGAGAATCTGACATTAAAAAAATGTTGGTTGAGGCCGGATTTCAGGAAGACGGAC AGACAGTCCTTTACGATGGACGTACAGGCGAGCGGTTTGAGCAGGAAGTAACAGTCGGTGTTATGTATATCCTGAAACTT CACCACCTTGTTGATACTAAACTGCACGCACGGTCAACCGGCCCATACTCACTTGTTACACAGCAGCCTCTCGGTGGTAA AGCACAGTTTGGTGGGCAGAGGCTCGGAGAGATGGAGGTTTGGGCACTTGAGGCATACGGTGCTGCGAATGTCCTGCAGG AGATGCTTACTGTTAAGTCTGACGACGTTGAAGGACGTACAACAGTTTATGAAGCTATCGTTAACGGTAACTTCAGCTTT ACTCCTAGCATGCCGGAGTCATTTAACGTTCTTATAAAAGAACTTCAGGGTCTTGCGTTGGATATGGATCTGCTCTCGAT GGATGAGGACGGAGTTCTTCAGATGCCTGAGAATGATAATAAACATAATGACGATGATAATATGGAGGACTCATAA Protein sequence : MYLTSKPTERRNFSRIQKVIDIPDLIEVQRDSYVDFLQAEYTPETRVVKGLEEVFREIFPITDFNETAVLEYISYSIEKY KYTPGEAIDRSTTFAAPLKIKVRLVTYDVNEETGEKMVVSAKESEVYLCDIPMMTDRGTFVINGVERVIVNQLHRSPGIF FEDLTASKGVMEKHLFSARIIPYRGSWIDFDFDSKNIMYVRIDKKRKIPVTVLLKALGYTEKDILDTYYTKEKITFDERD RIFKEFNEDIILGLRNSLDILDKEGNVVVKANHKITKAARKRMVKAEIEKIPVAFEDIEHTFFAEDVVTPDGEVLIESNT AISEEMFDKLKENNIREFQVLFIDRLTSDSIMRDILAVDKVKTQEEALIDIYKKLRPGEPATEETAKTLFDNLFFNPKRY DLSKVGRLKINKRLGLDVDLDTTTLTAEDIVETVRVLENIRKGLDKVDDIDHLGHRRVRAAGEQLQNHIRIGLSRMEKTV KERMSIQDVEDLTPQDLLNAKPLSASIKEFFGSYQLSQFMDQTNPLSEITHKRRLSALGPGGLNRDRAGFEVRDVHTSHY GRICPIETPEGPNIGLITSLTTFAKVNEFGFIETPYRKVHDCVVSNDVVYMSAIEEEDYYVAQANAPLNPDGTFIRDFVA ARYQGDSLLTGKENIQYMDISPKQIVSVSAALIPFLEHDDANRALMGSNMQRQAVPLVRTDSPIVGTGMEGKVAVDSGAV ITAKRPGVIEYIDSAKIAVRYKDGDDFGLDVYDLVKYRRSNQDTCINYKPIVKPGEKVEQGAMLAGGPATDNGELALGQN MVLAFMPWMGYNYEDSILISENVVKEDRYTSIHIEEFEIEARDTKLGPEEITADIPNVSDEALKDLDESGIIRIGARVKP RDILVGKVTPKGETQATPEEKLLRAIFGEKAGDVKDASLRVPPSITGTVVDVQVMTRRGIEKDSRTEIIEKAEYESIQKD YERELKALEKSRNDQISSFLVGKKLKSDYSNNEIRIAKDTELTAELVKDFLYTDLIQIEINEQSAFEAHIQSVNGQYFVK VQAAEEYFRDKKKKVEKGDELPAGVLKSVKVYVAIKRKLSVGDKMAGRHGNKGVVSRILPAEDMPYLPDGTPVDVVMNPL AVPSRMNVGQVLEVHLGWAGRKLGMKVATEVFDGARESDIKKMLVEAGFQEDGQTVLYDGRTGERFEQEVTVGVMYILKL HHLVDTKLHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAANVLQEMLTVKSDDVEGRTTVYEAIVNGNFSF TPSMPESFNVLIKELQGLALDMDLLSMDEDGVLQMPENDNKHNDDDNMEDS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 53 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 53 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Dacet_0365 | YP_003503121.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 53 |
| Dacet_0365 | YP_003503121.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 53 |
| Dacet_0365 | YP_003503121.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 53 |
| Dacet_0365 | YP_003503121.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 53 |
| Dacet_0365 | YP_003503121.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 53 |
| Dacet_0365 | YP_003503121.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 53 |
| Dacet_0365 | YP_003503121.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 51 |
| Dacet_0365 | YP_003503121.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 51 |
| Dacet_0365 | YP_003503121.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 51 |
| Dacet_0365 | YP_003503121.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 51 |
| Dacet_0365 | YP_003503121.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 51 |
| Dacet_0365 | YP_003503121.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 51 |
| Dacet_0365 | YP_003503121.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 51 |
| Dacet_0365 | YP_003503121.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 51 |
| Dacet_0365 | YP_003503121.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 50 |
| Dacet_0365 | YP_003503121.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 50 |
| Dacet_0365 | YP_003503121.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 49 |
