|
Name : rpoB (PANA_0215) Accession : YP_003518510.1 Strain : Pantoea ananatis LMG 20103 Genome accession: NC_013956 Putative virulence/resistance : Unknown Product : RpoB Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 250573 - 254601 bp Length : 4029 bp Strand : + Note : DNA-directed RNA polymerase beta chain; Similar to Pantoea sp. At-9b, DNA-directed RNA polymerase, beta subunit (NCBI: ZP_05732282.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic DNA sequence : ATGGTTTACTCCTATACCGAGAAAAAACGTATTCGTAAGGATTTTGGTAAACGTCCGCAAGTTTTGGACATACCTTATCT CCTTTCCATCCAGCTTGATTCGTTTCAGAAGTTTATCGAGCAAGATCCAGAAGGTCAGTACGGACTGGAAGCTGCATTCC GCTCTGTATTCCCTATTGCGAGCTACAGCGGCAACTCTGAGTTGCAGTATGTCAGCTATCGCTTAGGTGAACCTGTCTTT GACGTGAAAGAGTGTCAGATCCGTGGCGTGACCTACTCGGCACCGCTGCGCGTGAAACTGCGTCTGGTGATCTATGAGCG CGAAGCGCCAGAAGGCACAGTAAAAGACATTAAAGAACAAGAAGTCTACATGGGTGAAATTCCACTCATGACTGACAACG GTACCTTTGTTATCAACGGTACTGAACGTGTTATCGTTTCTCAGCTGCATCGTAGTCCTGGCGTGTTCTTTGACAGCGAT AAGGGTAAAACCCACTCCTCGGGTAAAGTGCTGTATAACGCACGTATCATCCCTTACCGTGGTTCATGGCTCGACTTCGA GTTTGACCCGAAAGACAACCTTTTCGTCCGTATTGACCGTCGTCGTAAGCTGCCGGCCAGTATCATTCTGCGCGCACTGC ATTACACCACTGCTCAAATTCTCGACGTGTTCTTCGAGAAAGTGGTGTACGAAATTCGTGACAACAAGCTGCAGATGGAA CTGGTGCCAGAGCGCCTGCGCGGTGAAACCGCGACCTTCGATATCGAATCGAATGGCACGGTCTACGTTGAGAAAGGGCG TCGCATCACTGCGCGTCATATTCGTCAGCTGGAAAAAGACGGTATCCAACACATCGAAGTCCCTGTGGAATACATCGCGG GCAAAGTGGTCTCTAAAGACTACATCGATGAGAATACCGGTGAGCTGATCGTTGCGGCCAACATGGAACTGTCGCTGGAT CTGCTGGCGAAGCTGAGCCAGTCGGGTCACAAGCGCATTGAAACGCTGTTCACCAACGATTTGGATCACGGCCCATACAT CTCCGAGACGCTGCGCGTTGACCCAACCAACGATCGCCTGAGCGCGCTGGTTGAGATCTACCGCATGATGCGTCCTGGTG AGCCGCCAACGCGTGAAGCTGCAGAGAACCTGTTTGAGAACCTGTTCTTCTCTGAAGATCGTTACGATCTTTCTGCAGTC GGCCGCATGAAGTTCAACCGTTCATTGCTGCGTGATGAGATCGAAGGTTCAGGTATCCTGAGCAAAGAAGACATCATCGA AGTGATGAAAAAACTGATCGACATCCGTAACGGTAAAGGCGAAGTGGACGATATCGACCACCTCGGTAACCGTCGTATTC GTTCAGTCGGTGAAATGGCTGAAAACCAGTTCCGCGTCGGTCTGGTCCGTGTTGAGCGTGCAGTGAAAGAGCGTCTTTCT CTGGGCGACCTCGATACGCTGATGCCACAGGACATGATCAACGCCAAGCCAATTTCGGCGGCGGTGAAAGAGTTCTTTGG TTCCAGCCAGCTGTCTCAGTTTATGGATCAGAACAACCCCTTGTCAGAGATTACGCACAAGCGTCGTATCTCTGCTCTCG GCCCGGGCGGTTTAACCCGTGAGCGTGCCGGCTTCGAAGTGCGTGACGTACACCCAACGCACTACGGTCGTGTCTGCCCA ATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCCTTGTCTGTGTACGCGCAGACGAACGAGTACGGTTTCCT GGAAACCCCTTATCGTCGCGTTATTGACGGTGTGGTTTCCGATGAAATTCATTACCTTTCTGCAATCGAAGAAGGTAACT ACGTTATCGCGCAGGCGAACACCAATCTGTCAGAAGAAGGTGCGTTCGTTGATGACCTGGTCACCTGCCGTAGCAAAGGC GAATCAAGTCTGTTCAGCCGCGATCAGGTTGACTACATGGACGTTTCCACCCAGCAGGTGGTTTCTGTCGGTGCGTCACT GATTCCGTTCCTGGAACACGATGATGCTAACCGCGCCCTGATGGGTGCGAACATGCAACGTCAGGCCGTTCCTACTCTGC GTGCTGATAAGCCGCTGGTAGGTACCGGTATGGAGCGCGCTGTAGCCGTTGACTCCGGTGTTACCGCTGTTGCGAAACGT GGTGGTACCGTTCAGTACGTTGATGCATCACGTATCGTTATTAAAGTTAACGAAGACGAGATGTACCCGGGCGAAGCGGG TATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACACCTGTATCAATCAGATGCCGTGTGTCTCTCTGG GTGAGCCCGTTGAACGTGGTGATGTGCTGGCTGACGGCCCGTCTACCGATCTCGGTGAGCTGGCGCTGGGTCAGAACATG CGCGTCGCGTTCATGCCGTGGAACGGTTACAACTTCGAAGACTCCATTTTAGTCTCCGAGCGCGTAGTGCAGGAAGATCG CTTCACCACCATCCACATTCAGGAACTGGCCTGTGTGTCTCGTGACACCAAGCTGGGGCCAGAAGAGATCACGGCTGACA TCCCGAACGTGGGCGAAGCTGCACTCTCTAAACTGGATGAGTCCGGTATCGTTTATATCGGTGCTGAAGTGACCGGCGGT GACATTCTGGTTGGTAAGGTGACGCCAAAAGGCGAAACCCAGCTGACGCCAGAAGAGAAGCTGCTGCGTGCGATCTTCGG TGAGAAAGCGTCTGACGTTAAAGACTCTTCTCTGCGTGTACCGAACGGTGTTTCCGGTACCGTTATCGACGTTCAGGTCT TCACCCGCGATGGCGTGGAAAAAGACAAGCGTGCGCTGGAAATCGAAGAAATGCAGCTGAAGCAGGCCAAGAAAGACCTG TCTGAAGAGCTGCAGATCCTGGAAGCGGGCCTGTTTAGCCGTATCCAGTCTGTCCTGATTTCCGGTGGCGTTGAAGCAGA CAAACTGGACAAGCTGCCGCGTGAGCGTTGGCTGGAGCTGGGTCTGACTGACGAAGCCAAGCAAAACCAGCTGGAGCAGC TGGCAGAGCAGTACGACGAACTGAAGCACGAGTTTGAGAAAAAACTCGAAGGTAAGCGTCGTAAAATCACCCAAGGCGAT GATCTGGCACCTGGCGTGCTGAAAATCGTTAAGGTTTATCTGGCTGTTAAACGTCAGATTCAGCCTGGTGATAAAATGGC AGGTCGTCACGGTAACAAAGGTGTTATCTCTAAGATCAACCCAATCGAAGACATGCCTTACGATGAGAACGGTACGCCGG TCGATATCGTACTGAACCCGCTGGGCGTACCTTCGCGTATGAACATCGGTCAGATCCTTGAGACTCACCTGGGGATGGCA GCGAAAGGTATCGGCGAGAAGATCAACGCGATGCTGAAAAAGCAGGAAGAAGTCGCCAAGCTGCGCGAATTCATCCAGCG TGCTTACGATCTGGGCACCGATGTGCGTCAGAAAGTTGACCTGAACACCTTTACTGATGACGAAGTTCTGCGCCTGGCTG AGAACCTGAAAAAAGGTATGCCAATTGCCACGCCGGTGTTTGATGGTGCGAAAGAGAGCGAAATCAAAGAGCTGTTAGAG CTCGGCGGTCTGCCTTCTTCCGGTCAGATTACCCTGTTTGATGGCCGTACTGGTGAGCAGTTCGAACGTCAGGTAACCGT AGGCTATATGTACATGCTGAAACTCAACCACCTGGTTGATGACAAGATGCACGCACGTTCTACCGGTTCCTATAGCCTCG TTACTCAGCAGCCGCTGGGTGGTAAGGCACAGTTCGGTGGTCAGCGCTTCGGTGAGATGGAAGTATGGGCGCTGGAAGCT TACGGTGCTGCGTATACCCTTCAGGAAATGCTTACCGTTAAGTCTGATGACGTCAACGGCCGTACCAAGATGTATAAGAA CATCGTGGATGGCAACCATCAGATGGAACCTGGCATGCCAGAATCGTTCAACGTACTGTTGAAAGAGATTCGCTCGCTGG GTATCAACATCGAGCTGGAAGACGAGTAA Protein sequence : MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIASYSGNSELQYVSYRLGEPVF DVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPASIILRALHYTTAQILDVFFEKVVYEIRDNKLQME LVPERLRGETATFDIESNGTVYVEKGRRITARHIRQLEKDGIQHIEVPVEYIAGKVVSKDYIDENTGELIVAANMELSLD LLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAV GRMKFNRSLLRDEIEGSGILSKEDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP IETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVIDGVVSDEIHYLSAIEEGNYVIAQANTNLSEEGAFVDDLVTCRSKG ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL SEELQILEAGLFSRIQSVLISGGVEADKLDKLPRERWLELGLTDEAKQNQLEQLAEQYDELKHEFEKKLEGKRRKITQGD DLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA AKGIGEKINAMLKKQEEVAKLREFIQRAYDLGTDVRQKVDLNTFTDDEVLRLAENLKKGMPIATPVFDGAKESEIKELLE LGGLPSSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 70 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 70 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_003518510.1 | RpoB | CP001918.1.gene250.p | Protein | 0.0 | 97 |
| rpoB | YP_003518510.1 | RpoB | CP001138.1.gene4362. | Protein | 0.0 | 97 |
| rpoB | YP_003518510.1 | RpoB | CP000647.1.gene4402. | Protein | 0.0 | 97 |
| rpoB | YP_003518510.1 | RpoB | NC_002695.1.914942.p | Protein | 0.0 | 96 |
| rpoB | YP_003518510.1 | RpoB | CP000034.1.gene3741. | Protein | 0.0 | 96 |
| rpoB | YP_003518510.1 | RpoB | CP004022.1.gene2794. | Protein | 0.0 | 93 |
| rpoB | YP_003518510.1 | RpoB | NC_002516.2.881699.p | Protein | 0.0 | 73 |
| rpoB | YP_003518510.1 | RpoB | NC_009085.4918494.p0 | Protein | 0.0 | 70 |
| rpoB | YP_003518510.1 | RpoB | NC_010400.5987325.p0 | Protein | 0.0 | 70 |
| rpoB | YP_003518510.1 | RpoB | NC_010611.6233925.p0 | Protein | 0.0 | 70 |
| rpoB | YP_003518510.1 | RpoB | NC_011595.7060572.p0 | Protein | 0.0 | 70 |
| rpoB | YP_003518510.1 | RpoB | NC_010410.6003841.p0 | Protein | 0.0 | 70 |
| rpoB | YP_003518510.1 | RpoB | NC_011586.7046027.p0 | Protein | 0.0 | 70 |
| rpoB | YP_003518510.1 | RpoB | CP000675.2.gene392.p | Protein | 0.0 | 69 |
| rpoB | YP_003518510.1 | RpoB | NC_008702.1.4609796. | Protein | 0.0 | 66 |
| rpoB | YP_003518510.1 | RpoB | CP002695.1.gene18.p0 | Protein | 0.0 | 65 |
| rpoB | YP_003518510.1 | RpoB | NC_011035.1.6448762. | Protein | 0.0 | 64 |
