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Name : secD (PANA_0965) Accession : YP_003519260.1 Strain : Pantoea ananatis LMG 20103 Genome accession: NC_013956 Putative virulence/resistance : Unknown Product : SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1115956 - 1117803 bp Length : 1848 bp Strand : + Note : Protein-export membrane protein SecD; Similar to Pantoea sp. At-9b, protein-export membrane protein SecD (NCBI: ZP_05727453.1); COG: Intracellular trafficking, secretion, and vesicular transport; Subcellular localization as predicted by Psort 2.0: Inner M DNA sequence : GTGTTAAATCGTTATCCTTTGTGGAAGTACATAATGCTGGTCGTGGTGCTTGTCATTGGCCTGGTGTATGCACTTCCCAA CCTTTATGGTGAGGATCCGGCTGTTCAGATCACTGGCGCGCGCGGAAGCGCCGCCAGTGAGCAAACGTTGGATCAAATTC AGAACGTATTAAAACAAGACAATATTCAAAGTAAGTCTGTTGCGCTGGAAAATGGCGCGATTACCGCGCGTTTTGCCAAT ACGGATGTGCAACTGCGTGCCCGCGAAGCGATCATGAAAGCGCTGGGCGAAAACTATGTGGTCGCGCTTAACCTTGCACC GGCCACGCCGCGCTGGCTGACGCTGCTGGCGGCACAGCCCATGAAGCTTGGCCTCGATCTGCGTGGTGGTGTGCACTTCC TGATGGAAGTGGATATGGACACTGCCCTGAGCAAACTGCAAGAGCAGAATGCTGACAGCCTGCGCAGCGACCTGCGCGAA AAGAATATCCCTTATACCAACGTCAACAAGATTGCTAACTACGGCGTGGAAATTCGTTTCCGTGACGCAGCCAGCCGCGA TGCTGCGGTTAAGTGGCTATCCTCGCGTCATCAGGATCTCGTCATTAACAGCAGTGGCGATGATGCACTGCGCGCCACCA TGACCGATGCCCGCCTCAGCGAAGCACGTGAATATGCGGTTCAGCAGAACATTACTATCCTGCGTAACCGTGTAAACCAA CTGGGTGTTGCAGAACCGTTGGTACAGCGTCAGGGTTCTGACCGCATCGTGGTTGAACTGCCAGGTATTCAGGACACCGC GCGCGCCAAAGAAATTTTAGGTGCGACGGCGACGCTGGAATTCCGTCTGGTTAACACCAGCGTGGATCCTACCGCCGCCG CCAGCGGTCGTGTACCGGGTGATTCTGAAGTGAAAGACATGCGTGATGGACGCCCTGTGGTGCTCTATAAACGCGTGATC CTGACCGGTGACCACATTACCGATTCCACATCCAGCATGGATGAGTACAACCAGCCTCAGGTGAACATTTCACTGGACGG CGCGGGCGGTAATATCATGTCTAACTTCACCAAGGACAACATCGGTAAGCCGATGGCGACCCTGTTTGTGGAGTACAAAG ACAGCGGCAAGAAAGATGCTAACGGTCGTGCCATTCTGGTGAAACAGGAAGAGGTGATCAACGTCGCCAATATCCAGTCT CGCCTGGGTAACAGCTTCCGCATCACCGGTATCAGCAACCCGAACGAAGCACGTCAGCTGTCGCTGCTGCTGCGTGCCGG TGCGCTGATTGCGCCTATCCAGATTGTGGAAGAGCGGACTATTGGTCCAACGATGGGGCAGCAGAACATTACTCAGGGTC TGGAAGCCTGCCTGTGGGGCCTGGTCGCCTCTATCCTGTTTATGGTGCTGTACTACAAGAAGGTGGGCCTGATTGCCACC AGCGCACTGCTGGCAAACCTGGTACTGATTGTCGGTATCATGTCACTGCTGCCGGGCGCCACGCTGACGATGCCTGGCAT TGCCGGTATCGTGCTGACGCTGGCGGTGGCGGTCGATGCCAACGTACTGATCAACGAGCGTATTAAAGAAGAACTGCGTA ACGGGCGTAGCGTGCAGCAGGCAATTCATGAGGGCTACAAAGGCGCCTTCTCCAGTATTGTCGATGCTAACGTCACCACC CTGATCAAAGTGGTGATTCTGTATGCGATCGGTACGGGTTCCATTAAGGGCTTTGCGATTACAACGGCTATTGGTATTGC GACCTCAATGTTCACATCGATTGTCGGTACCCGCGCCATCATTAACCTGATGTACGGTGGCAAGCGCATCAAAAAGCTGT CTATCTGA Protein sequence : MLNRYPLWKYIMLVVVLVIGLVYALPNLYGEDPAVQITGARGSAASEQTLDQIQNVLKQDNIQSKSVALENGAITARFAN TDVQLRAREAIMKALGENYVVALNLAPATPRWLTLLAAQPMKLGLDLRGGVHFLMEVDMDTALSKLQEQNADSLRSDLRE KNIPYTNVNKIANYGVEIRFRDAASRDAAVKWLSSRHQDLVINSSGDDALRATMTDARLSEAREYAVQQNITILRNRVNQ LGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTSVDPTAAASGRVPGDSEVKDMRDGRPVVLYKRVI LTGDHITDSTSSMDEYNQPQVNISLDGAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAILVKQEEVINVANIQS RLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGQQNITQGLEACLWGLVASILFMVLYYKKVGLIAT SALLANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANVTT LIKVVILYAIGTGSIKGFAITTAIGIATSMFTSIVGTRAIINLMYGGKRIKKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-126 | 48 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 3e-126 | 48 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 2e-126 | 48 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 2e-126 | 48 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 2e-126 | 48 |
