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Name : Slit_0760 (Slit_0760) Accession : YP_003523386.1 Strain : Sideroxydans lithotrophicus ES-1 Genome accession: NC_013959 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 757868 - 761938 bp Length : 4071 bp Strand : + Note : TIGRFAM: DNA-directed RNA polymerase subunit beta; KEGG: nmu:Nmul_A0759 DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase subunit beta; RNA polymerase Rpb2 domain 2; DNA-directed RNA DNA sequence : ATGAGCTATTCTTTTACCGAAAAAAAACGTATTCGTAAAAGTTTTGCGAAGCGCGTCGGCGCTTTGCCGGTGCCGTTTTT GTTGTCCACCCAGTTGGAATCCTACAGCGATTTCCTGCAGGCGTGGGTCGCACCCGAACAACGCAAGAACGAAGGCCTGC AAGCCGCCTTCAATTCCATCTTCCCGATCGAGAGCCACACCAAGTTCGCGCGCCTGGACTTCGTCAGCTATACGCTGGGT ATGCCGCCGTTCGATGTGCGTGAATGCCAGCAACGCGGTTTGACCTATGCTTCGCCGTTGCGTGCTCGTGTGCGCCTGAC CATTCTGGACAAGGAAGCCTCCAAGCCGACCGTGAAGGAGGTGAAGGAGCAGGAAGTCTATATGGGCGAGATCCCGTTGA TGACCAATACCGGCTCGTTCGTGATCAACGGCACCGAGCGCGTGATCGTCTCGCAGTTGCACCGTTCTCCCGGCGTGTTC TTCGAGCATGACCGCGGCAAGACCCACTCTTCCGGCAAGCTGCTGTTCTCCGCGCGCGTGATTCCCTACCGTGGTTCGTG GCTGGACTTCGAGTTCGACGCCAAGGATTACGTCTACTTCCGTATCGACCGCCGCCGCAAGATGCCGGTGACGATCCTGC TGAAGTCGCTGGGCTATACACCGGAACAGATCCTGCAGATGTTCTTCCAGTTCGATACCTTCCATTTCGGTAAGAAGGGC ATCCAGTTCGAGGTGGTGCCAGAGCGCTTGCGCGGCGAGATTGCGCGCTTCGATATCGAAGGCAAGGGCGGCAAGCTCAT CGTCGCCAAGGATAAGCGCATCACCGTGCGCCATATCCGCGAGATGCAGGAGGCCGGCATCGACAAGCTGACCGTGGGTA CGGATTTTCTGGTTGGCCGGGTATTGGCGCACAACATCGTGGACAAGGACAGCGGCGAGATCATCGCCAATGCCAACGAC GAGATCACCGAGACTTTGCTGGACAAGCTGGAAGCTGCGGGTATCGCCAAGATCAATACGCTGTACACCAACGACTTGGA CCAGGGCGGTTTCATTTCGCAGACCTTGCGTACCGACGAGACGACTGACCAGTGGACGGCGCGCGTGGCTATCTACCGCA TGATGCGTCCCGGCGAGCCGCCCACCGAAGATGCAGTGGAGGCGTTGTTCAACGGCTTGTTCTTCAACGAAGATCGCTAT GACCTGTCGGCAGTCGGTCGCATGAAGTTCAATCGCCGCGTGGGTCGCGAGGAGTTGACTGGTGCTGTCACTCTGTCCAA CGAAGACATCGTGGAAGTGATCCGCATCCTGGTCGAGTTGCGCAACGGTCGCGGCGAGATCGACGACATCGACCACCTGG GTAACCGCCGCGTGCGCGCCGTGGGCGAATTGGCCGAGAACCAGTTCCGTACCGGTCTGGCTCGTGTCGAGCGCGCCGTC AAGGAGCGTCTGGGCCAGGCCGAAGCCGACAACCTGATGCCGCACGACCTGATCAACGCCAAGCCGATCTCCGCTGCAGT CAAGGAGTTCTTCGGTTCGTCGCAACTGTCGCAGTTCATGGACCAGACCAACCCGCTGGCGGAAGTGACGCACAAGCGTC GTATTTCTGCGCTGGGACCGGGCGGTCTGACCCGTGAGCGCGCCGGCTTCGAAGTGCGCGACGTGCACCCGACCCACTAT GGCCGCGTGTGCCCGATCGAGACACCGGAAGGTCCGAACATCGGCCTGATCAACTCGCTGGCGCTGTATGCGCGCACCAA CGAATACGGCTTCATCGAGACGCCGTATCGCCGCGTAGTGAAGAGCCGCGCCACTGACGACGTGGACTACCTGTCTGCGA TCGAAGAAGGCAAGTTCACCATCGCGCAGGCGAATGCCGAACTGGACAAGAAGGGCCACTTCACCAACGACATCGTGTCT GCACGTCAACACAACGAGTTCGTGCTGGCCGAGCCGGACAAGCTGGAATACATGGACGTGGCGCCGGCACAGGTGGTGTC CGTGGCTGCTTCGCTGATTCCGTTCCTGGAGCACGATGACGCGAACCGTGCCTTGATGGGCGCCAACATGCAACGCCAGG CAGTGCCTGTGCTGCGTGCCGAGAAGGCATTGGTCGGTACCGGTATCGAGCGCACCGTGGCGGTCGACTCCGGTACGGCT GTACAAGCCTGGCGCGGCGGTCGCGTGGACTATGTGGATTCCGGCCGTATCGTGGTGCGCGTCAACGACGACGAAACCAC CGCGGGCGAAGTCGGCGTGGACATCTACAACCTGACCAAGTACACCCGTTCCAACCAGAACACCAACATCAACCAGCGTC CGCTGGTGCGCGTGGGCGATGTGATCGCCCGCGGCGACGTGGTGGCTGACGGAGCTTCGACTGACATGGGCGAATTGGCG CTGGGTCAGAACATGATGATCGCATTCATGCCGTGGAACGGCTACAACTTCGAGGACTCGATCCTGATTTCCGAGCGCGT GGTCGCGGAAGACCGTTTCACTTCGATCCATATCGAAGAGTTGACGGTGATGGCTCGCGACACCAAGCTGGGCACCGAAG AAATTACCCGCGACATCCCGAACCTGTCGGAAGCGCAGATGGCGCGTCTGGACGAGTGCGGCATCGTGCATATCGGCGCC GAAGTCGGCGTGGGTGACGTGCTGGTGGGCAAGGTTACCCCCAAGGGCGAGACGCAACTGACGCCGGAAGAGAAACTGCT GCGCGCGATCTTCGGCGAGAAGGCTTCCGATGTGAAGGACACCAGCTTGCGCGTGAAGGCCGGCATCTCCGGTACCGTCA TCGACGTGCAAGTGTTCACCCGCGAAGGCTTGCAACGCGACAAGCGCGCGCAACAGATCATCGACGATGAACTGTCGCGC TACAAGAAAGACCTGGCCGACCAGATGCGTATCGTCGAGGCTGACTTGTTTGCCCGTCTGGAGAAGTTGCTGCACAACAA GGTCGCCAATGGCGGTCCGAAGAAACTGGCCAAGGGTACCAAGCTGAACAAGGAATACCTGCACAGCATCGAGCACCACC AGTGGTTCGATATCCGCGTTGCCGACGATGAGGTGGCTGCGCAGATGGAGCAAGTCAAGGAAGCGCTGGCACAGAAGCGT GTGGAATTCGATGCGGCGTTCGAACTGAAGAAAAAGAAACTGACCCAGGGCGACGAGTTGCAAGCCGGCGTGCAGAAGAT GGTCAAGGTGTATGTGGCGGTTAAACGCCGCCTGCAGCCCGGCGACAAGATGGCGGGTCGCCACGGAAACAAGGGTGTGG TGTCACGCATCGTGCCGGTGGAAGACATGCCGCGCATGGCCGACGGTACGCCGGTGGAAGTGGTGCTGAACCCGCTGGGC GTGCCGTCGCGTATGAACATCGGACAGGTGCTGGAAGTGCACTTGGGCTGGGCGGCCAAGGGGCTGGGCAAGAAGATCAA CCAGATGCTGGAAGCTGAGGCCAAGATCGCCGATGTGCGCAAATTCCTCGGCAAGATATACAAGGGCGACCAGGCCGACG AGATCGCGACTTTCACCGACGAGGAGGTTGTCGAGTTGTGCCGCAACCTGAAGGCCGGTGTGCCATTCGCGACCCCCGTG TTCGACGGAGCCAGCGAAGAAGAGATCAAGGATCTGCTGGAGCTGGCCGATCTGCCGCGTTCCGGCCAGATCCAGCTGTA CGACGGACGCACCGGCGATGCCTTCGATCGCAAGGTTACCGTGGGTTACATGCATGTGCTGAAACTGCACCACCTGGTCG ACGACAAGATGCACGCGCGTTCCACTGGTCCTTACAGCCTGGTCACGCAGCAGCCTCTGGGCGGCAAGGCGCAGTTCGGT GGTCAACGTTTCGGTGAGATGGAAGTCTGGGCGCTGGAGGCATACGGTGCGGCATACACGCTACAGGAGATGCTCACGGT CAAGTCAGATGACGTCAACGGACGTACCAAGGTGTACGAGAACATCGTCAAGGGCGATCACAAGATCGATGCCGGCATGC CGGAGTCGTTCAACGTGCTCACCAAGGAAATCCGCTCTTTGGGTATCGATATCGATCTGGAACGGCACTGA Protein sequence : MSYSFTEKKRIRKSFAKRVGALPVPFLLSTQLESYSDFLQAWVAPEQRKNEGLQAAFNSIFPIESHTKFARLDFVSYTLG MPPFDVRECQQRGLTYASPLRARVRLTILDKEASKPTVKEVKEQEVYMGEIPLMTNTGSFVINGTERVIVSQLHRSPGVF FEHDRGKTHSSGKLLFSARVIPYRGSWLDFEFDAKDYVYFRIDRRRKMPVTILLKSLGYTPEQILQMFFQFDTFHFGKKG IQFEVVPERLRGEIARFDIEGKGGKLIVAKDKRITVRHIREMQEAGIDKLTVGTDFLVGRVLAHNIVDKDSGEIIANAND EITETLLDKLEAAGIAKINTLYTNDLDQGGFISQTLRTDETTDQWTARVAIYRMMRPGEPPTEDAVEALFNGLFFNEDRY DLSAVGRMKFNRRVGREELTGAVTLSNEDIVEVIRILVELRNGRGEIDDIDHLGNRRVRAVGELAENQFRTGLARVERAV KERLGQAEADNLMPHDLINAKPISAAVKEFFGSSQLSQFMDQTNPLAEVTHKRRISALGPGGLTRERAGFEVRDVHPTHY GRVCPIETPEGPNIGLINSLALYARTNEYGFIETPYRRVVKSRATDDVDYLSAIEEGKFTIAQANAELDKKGHFTNDIVS ARQHNEFVLAEPDKLEYMDVAPAQVVSVAASLIPFLEHDDANRALMGANMQRQAVPVLRAEKALVGTGIERTVAVDSGTA VQAWRGGRVDYVDSGRIVVRVNDDETTAGEVGVDIYNLTKYTRSNQNTNINQRPLVRVGDVIARGDVVADGASTDMGELA LGQNMMIAFMPWNGYNFEDSILISERVVAEDRFTSIHIEELTVMARDTKLGTEEITRDIPNLSEAQMARLDECGIVHIGA EVGVGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVKAGISGTVIDVQVFTREGLQRDKRAQQIIDDELSR YKKDLADQMRIVEADLFARLEKLLHNKVANGGPKKLAKGTKLNKEYLHSIEHHQWFDIRVADDEVAAQMEQVKEALAQKR VEFDAAFELKKKKLTQGDELQAGVQKMVKVYVAVKRRLQPGDKMAGRHGNKGVVSRIVPVEDMPRMADGTPVEVVLNPLG VPSRMNIGQVLEVHLGWAAKGLGKKINQMLEAEAKIADVRKFLGKIYKGDQADEIATFTDEEVVELCRNLKAGVPFATPV FDGASEEEIKDLLELADLPRSGQIQLYDGRTGDAFDRKVTVGYMHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFG GQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKVYENIVKGDHKIDAGMPESFNVLTKEIRSLGIDIDLERH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 66 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 66 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Slit_0760 | YP_003523386.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 76 |
| Slit_0760 | YP_003523386.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 75 |
| Slit_0760 | YP_003523386.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 72 |
| Slit_0760 | YP_003523386.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 68 |
| Slit_0760 | YP_003523386.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 68 |
| Slit_0760 | YP_003523386.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 66 |
| Slit_0760 | YP_003523386.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 66 |
| Slit_0760 | YP_003523386.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 66 |
| Slit_0760 | YP_003523386.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 66 |
| Slit_0760 | YP_003523386.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 66 |
| Slit_0760 | YP_003523386.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 66 |
| Slit_0760 | YP_003523386.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 66 |
| Slit_0760 | YP_003523386.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 66 |
| Slit_0760 | YP_003523386.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 66 |
| Slit_0760 | YP_003523386.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 66 |
| Slit_0760 | YP_003523386.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 66 |
| Slit_0760 | YP_003523386.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 66 |
| Slit_0760 | YP_003523386.1 | DNA-directed RNA polymerase subunit beta | AE016830.1.gene3155. | Protein | 5e-180 | 46 |
| Slit_0760 | YP_003523386.1 | DNA-directed RNA polymerase subunit beta | CP003583.1.gene2745. | Protein | 0.0 | 46 |
| Slit_0760 | YP_003523386.1 | DNA-directed RNA polymerase subunit beta | NC_012469.1.7686402. | Protein | 1e-173 | 43 |
