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Name : Slit_0961 (Slit_0961) Accession : YP_003523586.1 Strain : Sideroxydans lithotrophicus ES-1 Genome accession: NC_013959 Putative virulence/resistance : Unknown Product : protein-export membrane protein SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 942340 - 944151 bp Length : 1812 bp Strand : + Note : KEGG: nmu:Nmul_A2427 preprotein translocase subunit SecD; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein DNA sequence : ATGAACCGCTATCCGCTGTGGAAGAATCTGCTGATAATTGTCGCGCTGATGCTGGGCCTGGTGTATGCCTTGCCCAATCT TTATGGCGAAGCACCCGCGGTGCAGGTGCTGCCGCTACGCTCGAATCTTAAGGCGGATGAAAAATTGCTGGCACGCGTGG AAGATGCGCTGAAGGCTGCACAATTGAATCCCGAAGCCATGTCCCTGGATGCGACCAGCGTCAAGGCACGCTTCAGCAAC ACCGATATCCAGCTCAAGGCAAAAGATGTGCTGCATGCCCAGCTGGGCGACGACTATATGGTGGCACTCAATCTGGTGCC GCGCTCGCCGCAATGGATGGCCAGCCTCAATGCCTTGCCGATGTACCTGGGTCTCGATCTGCGCGGAGGGGTGCATTTCC TGCTGCAGATCGATATGAAGGCGGCGCTGGACAAGGCCCTGGAGTCTGATTCCGGCGATATTCGCAGCAGTTTGCGTGAG GCTGACATTCCCTACTCGGGCGTGAGCCGTGATGCCAGCGCGATCACGATCAAGTTCCGCGATGCCGATGCGCGCAGCAA GGGCGAGGATGAACTTAAGCAGCGATTCGGCGGGCTTGAGTTCAATACAAGCGAAGATGGCAGGGAGTTCCTGCTGCTCG CCAGCCTCAAGCAGCAGGAACAGATTCGCATCCAGGAATCTGCCGTGCAGCAGAACCTCGTTACCTTGCGCAACCGGGTG AACGAACTCGGCGTGGCCGAGCCGGTGATCCAGCAGCAAGGCGCAGATCGCATCGTGGTGCAATTGCCGGGTGTGCAGGA TACCGCGCGCGCCAAGGACATCCTGGGGCGTACCGCCACACTGGAAGTGCGCATGGTGGATGATGAACACCATTTGAGTG CAGGCGGAATAGCTCCATTCGGCACTGAGATATTCAAGGATCGCGACGGTACTCCGCTGCTGGTGAAGAAAAGCGTGATT CTGACCGGCGAACGCATCAATGATGCCCAACCCGGTTTCGACAGCCGCAACAACGAACCGGCCGTGCACATCAATCTGGA TGCGGTCGGGGCACGCAAGTTCAAGGAAGCGACACGCGAGAATGTCGGCAAGCGCATGGCCATCATCCTGTTCGAAAAGG GCAAGGGCGAAGTGGTCACTGCACCGGTGATTCGTGAAGAGATCGGCGGCGGGCGCGTGCAGATCAGCGGCAAGATGAAC ACCGAAGAGGCCAAGGATACTGCATTGCTGTTGCGTGCCGGGGCTCTGGCTGCGCCGATGGAGATTGTCGAGGAACGTAC TGTCGGCCCGAGCCTGGGTGCAGACAATATTGCGCGGGGTTTCCATTCCACGCAGATCGGCTTCATTGCCATTGCGATCT TCATGATTGCCTACTACCTGATGTTCGGTGGAGTTTCCGTACTTGCGCTGGGGGCCAACCTGTTGCTGCTAATAGCGCTG CTGTCCATGCTGCAGGCCACACTGACACTGCCCGGCATGGCGGGTATCGCATTGACACTGGGTATGGCGATCGACTCCAA TGTGCTGATCAACGAGCGTATCCGTGAGGAACTGCGCAACGGGGTGCCGCCGCAAATGGCGATCCATGCGGGCTATGAGA ACGCCTTTGCCACCATTCTGGACTCCAATATCACCACGCTGATAGCCGGTATCGCTCTGTTCATGTTCGGTTCCGGGCCG ATCAAGGGGTTCGCGGTGGTGCTCTGCCTGGGCATATTGACTTCCATGTTCAGCGCCGTGCTGGTATCGCGTGCGCTGGT CAATCTGATCTATGGCCGCAAAGCGCGGCTGAACAAGGTTGCCATCGGCTAA Protein sequence : MNRYPLWKNLLIIVALMLGLVYALPNLYGEAPAVQVLPLRSNLKADEKLLARVEDALKAAQLNPEAMSLDATSVKARFSN TDIQLKAKDVLHAQLGDDYMVALNLVPRSPQWMASLNALPMYLGLDLRGGVHFLLQIDMKAALDKALESDSGDIRSSLRE ADIPYSGVSRDASAITIKFRDADARSKGEDELKQRFGGLEFNTSEDGREFLLLASLKQQEQIRIQESAVQQNLVTLRNRV NELGVAEPVIQQQGADRIVVQLPGVQDTARAKDILGRTATLEVRMVDDEHHLSAGGIAPFGTEIFKDRDGTPLLVKKSVI LTGERINDAQPGFDSRNNEPAVHINLDAVGARKFKEATRENVGKRMAIILFEKGKGEVVTAPVIREEIGGGRVQISGKMN TEEAKDTALLLRAGALAAPMEIVEERTVGPSLGADNIARGFHSTQIGFIAIAIFMIAYYLMFGGVSVLALGANLLLLIAL LSMLQATLTLPGMAGIALTLGMAIDSNVLINERIREELRNGVPPQMAIHAGYENAFATILDSNITTLIAGIALFMFGSGP IKGFAVVLCLGILTSMFSAVLVSRALVNLIYGRKARLNKVAIG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 1e-96 | 43 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 8e-97 | 43 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 8e-97 | 43 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 8e-97 | 43 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 3e-97 | 43 |
