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Name : Nhal_2359 (Nhal_2359) Accession : YP_003527834.1 Strain : Nitrosococcus halophilus Nc 4 Genome accession: NC_013960 Putative virulence/resistance : Unknown Product : protein-export membrane protein SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 2431300 - 2433156 bp Length : 1857 bp Strand : + Note : TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: noc:Noc_2350 preprotein translocase subunit SecD DNA sequence : ATGAACCGTTATCCTCTTTGGAAAAACTTGCTTGTGCTGGTTGTGGTGCTCGTTGGCATTCTCTACGCTGCACCTAATTT GTTTGGAGATACCCCGGCGTTACAAATCTCAGCGACTCGGGGGGCTAGCCTGGAACCGGAGATCTTGACTCGGGTGGAGC AACTGCTCAAGGAACGAGGCTTGGACTATCAATCGGTCCGTTTGGAAGACCAGCGCCTTTTGGTTCGCCTCCGCCAAGCG GAGACCCAGCTCAAAGCCCAGGACGCCCTGAGGGAAGAATTGGGTTCGGATTACTCGATCGCCTTGCACTTGGCCCCTGC GACCCCCAGTTGGTTGCGAACCATTGGGGGACTCCCCATGAACTTGGGCTTGGATCTCCGTGGCGGGGTGCATTTTTTAA TGGAAGTGGACATGGAGGCCGCAGTCCAGCAGGCGGAAGAGCGCTATGTGGAAGATCTGCGATCCTTGTTGCGGGAGAAT CGGCTCCGTTACCTCAGCATTGGGCGGCTTGGCGCCGGGGGCGTGGAGATCAAGTTCCGTAATACGGAGCAACGGGATCA AGCCGAAACCCTCATCCATGATGAATATTTCGACTTGCTGTTGCAGCCTGTGGAGGAGGGCGGTTCCCCGCGCCTGGAGA TTACTTTAAGCGAAGAGGAAAAACGGGAAATCCAGCGTTTAGCCTTACAACAGAACATCACCACTTTGCGTAATCGGATT AATGAGCTCGGGGTGGCCGAACCCACTATCCAGCAGCAGGGCCGGAATCGCATTGTGGTGCAATTACCGGGTGTCCAGGA CACGGCCCGAGCTAAGGAAATTCTGGGCGCGACGGCAACTTTGGAGTTTCGCTTGGTGGATGTGACCCATGAGGTCCAAC GGGCGGTGGAAGGCAGAGTACCCGCCGGCTCCCGCCTCTATTATGAGCGGGGTGGGGCGCCCATCTTGCTCAAGAAGCGG GTGATACTGACCGGTGATCATATTATCGATGCCGCCTCGGGGATTGATCAGCAAAGCGGCAGTCCTGCGGTATTTGTCAC CCTCGATGGACAGGGCGCCCGACTCTTCAGCAAGGTCACAGGGGAAAATATTGGTAAACCCATGGCGGTGGTCTTTATCG AGACCAAGACCGAGACCCGGATGGAGGAAGGCGAATCGGTCAAGCTCCACCGGCGGGTCCCCGAGGTAATTAATGTGGCC ACCATCCGGGATCAACTGAGCAAGCGCTTCCAGATCACCGGGCTTGATTCCACCGAAGAAGCCCGTAACTTGGCTTTGTT GCTAAGAGCAGGAGCGTTGGCTGCACCCATTGATATCATTGAGGAGCGGACCATCGGTCCGAGCCTGGGGCAGGATAATA TAGAAAAGGGCTTTCAGTCCGTGCTGATTGGCTTTGCCCTGGTGCTGGTGTTTATGGCGCTCTACTATCGGGTCTTTGGT CTCATTGCCGATTTGGCGTTGACGGTCAACCTGGTGCTGTTAGTCTCACTGCTTTCTTTACTGCAAGCAACGCTCACCTT GCCCGGGATTGCCGGCATTGTGCTTACGGTGGGTATGGCAGTCGATGCCAATGTTTTGATTTTTCAGCGTATTCGTGAGG AACTTCGCAATGGCAATAGCCCCCAGGCCAGTATCGAGGCGGGTTATGCCAATGCCTTATCGACCATTGCGGATGCCAAC ATTACTACCCTGATCGCCGCGATAGTATTATTTGGATTTGGGACAGGGCCTATCAAAGGCTTTGCGGTCACTTTATCCTT GGGTATCCTCACCTCCATGTTTACTGCCATTATTGGCACCCGGGCAGTGATCAACCTCATTTATGGAGGGCGGCGCAAAG TAAGGCTAGCCATTTGA Protein sequence : MNRYPLWKNLLVLVVVLVGILYAAPNLFGDTPALQISATRGASLEPEILTRVEQLLKERGLDYQSVRLEDQRLLVRLRQA ETQLKAQDALREELGSDYSIALHLAPATPSWLRTIGGLPMNLGLDLRGGVHFLMEVDMEAAVQQAEERYVEDLRSLLREN RLRYLSIGRLGAGGVEIKFRNTEQRDQAETLIHDEYFDLLLQPVEEGGSPRLEITLSEEEKREIQRLALQQNITTLRNRI NELGVAEPTIQQQGRNRIVVQLPGVQDTARAKEILGATATLEFRLVDVTHEVQRAVEGRVPAGSRLYYERGGAPILLKKR VILTGDHIIDAASGIDQQSGSPAVFVTLDGQGARLFSKVTGENIGKPMAVVFIETKTETRMEEGESVKLHRRVPEVINVA TIRDQLSKRFQITGLDSTEEARNLALLLRAGALAAPIDIIEERTIGPSLGQDNIEKGFQSVLIGFALVLVFMALYYRVFG LIADLALTVNLVLLVSLLSLLQATLTLPGIAGIVLTVGMAVDANVLIFQRIREELRNGNSPQASIEAGYANALSTIADAN ITTLIAAIVLFGFGTGPIKGFAVTLSLGILTSMFTAIIGTRAVINLIYGGRRKVRLAI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 4e-112 | 48 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 2e-112 | 48 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 2e-112 | 48 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 2e-112 | 48 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-112 | 48 |
