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Name : Nhal_2378 (Nhal_2378) Accession : YP_003527853.1 Strain : Nitrosococcus halophilus Nc 4 Genome accession: NC_013960 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 2449522 - 2453607 bp Length : 4086 bp Strand : + Note : KEGG: noc:Noc_2331 DNA-directed RNA polymerase, beta subunit; TIGRFAM: DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 2; RNA polymerase s DNA sequence : ATGCCCTACTCGCTGACCGAGAAGAAGCGTATTCGTAAAGATTTTGGCAAGCTTTATAGTATACTGAAAACTCCTTTCCT GCTAGCAACACAAATCGATTCCTTCCGTAATTTCTTACAGATGGATGCACCTCCCAATAAGCGGGAGGATAAAGGGTTAC ATGCGGCATTCCAGAGCGTATTTCCCATTAAGAGCTATACAGAATACGCGGAACTCCAGTATGTCAGTTATCACCTTGGT ACTCCCTCGTTTGATGTTAAGGAGTGCCAAGTACGAGGTTTGACTTATGCAGCTCCACTACGGGTTAAGTTGCGCCTTGT TATTTATGACAAGGAGGCTCCCGCTAGCGAGCAAGTCGTCAAGGATGTAAAGGAACAAGAAGTCTACATGGGGGAAATCC CCCTAATGACCCCAAAAGGGAATTTTGTTATCAATGGAACAGAGCGGGTTATCGTCTCCCAATTACATCGCTCTCCAGGA GTTATCTTTGAGCACGATAAGGGCAAGACCCATTCCTCGGGGAAGTTGCTTTTTTCCGCTAGGATAATCCCCTATCGCGG GTCTTGGTTAGATTTTGAATTTGATCCTAAGGACTGCGTCTATGCCCGTATCGATCGCCGGCGCAAACTGCTAGCGACCA TATTATTACGTGCCCTTGGTTACAGCACCGAGGAAATCCTGATGATGTTCTTTGAGACTATTACAGTTCATCACCAGGGT TCAGCTTACTTATTAGATTTGCTGCCTCAGCGGCTTCGCGGCGAGTCTCTGCCCTTCGATATTATTAACCCCGATGGCGA GGTCATTGTCGAAGCCGAGCGACGGGTTACAGCACGGCATATCAAGCAGATGGAAAAGGCGGGGATGGAGACTCTGTCTG CGCCCAAGGAATTTTTAATAGGGAAGACTCTGGCTCGAGATCTAGTGGATACCGACACCGGGGAAGTCTTGGCTAGAGCT AATGACGAAATTACAGCAGAGTTAATGGAAGCCATAGAAGGCGCCGATATCCAAGCCTTTGATCTTATCTATACCAATGA TTTAGACCGTGGCCCTTTTATCTCCGATACCTTGCGGTTAGATCTTACCACTACGCCTTTGGAGGCCCAAATGGAAATCT ACCGCGTGATGCGTCCTGGGGAGCCGCCGACTAAGGAGGCCGCGCAGAATTTATTCCAAAATCTGTTTTTCAACCCCGAA CGCTACGATCTCTCCCCTGTGGGGCGAATGAAGTTTAATCGTCGCCTTGGGAAAGAGGATATTACTGGCCTAGGTGTATT ATCAAAAGAGGATATTGTCGATGTCATAAAAACTTTAATTGACATCCGCAACGGTTATGGCAGCGTGGATGACGTTGACC ATCTGGGCAACCGCCGAGTGCGCAGTGTTGGTGAAATGGCGGAGAACCAATTTCGGGTAGGTTTGGTTCGGGTCGAGCGG GCGGTGCGAGAGCGCTTAAGCTTAGCCGAGTCGGAAGGGCTGATGCCCCAGGAATTGATTAATGCGAAACCGGTGTCGGC AGCGATTAAGGAATTTTTTGGTTCTAGCCAACTGTCGCAATTTATGGATCAGAATAACCCGTTGTCGGAGGTAACCCATA AGCGACGGGTATCTGCACTAGGGCCAGGGGGACTCACCCGTGAGCGGGCGGGTTTCGAGGTGCGCGATGTACATCCTACC CATTATGGGCGGGTCTGCCCCATTGAGACACCCGAAGGCCCGAATATTGGTTTGATCAATTCCTTAGCGGTTTATGCTAG AACTAATCAATATGGTTTTATTGAAACGCCTTACCGAAAGGTAGTCGAAAGCAAGGTGACCGGCGAAGTGGAATATCTGT CGGCCATTGAGGAAGGGCAGTACGTGATTGCCCAGGCAAATGCGACTGCGGACGAGGAAGGCCGCCTGGTGGATATGCTC GTTTCTTGCCGCCACAAGAATGAATTCACGCTTTTGCCGCCGGAAAAGGTGCAGTACATCGATGTGTCACCTAAGCAGAT TGTATCGGTAGCCGCATCTTTGATTCCCTTTTTAGAGCACGATGATGCCAACCGTGCATTGATGGGGTCTAATATGCAGC GTCAGGCGGTACCCACCTTGCGGGCGGAGACCCCCTTAGTCGGTACGGGTATTGAGAAGGTTGTGGCCCGTGATTCAGGG GTGATGGTGGTTGCCCGCCGCGGAGGTATCGTGGATTCTGTGGATGCCGCCCGGGTGGTAGTGCGAGTCAATGATGAGGA AACGGCTGCTGATGAGCCCGGGGTTGATATTTACAACCTCACCAAGTATGCCCGCTCAAATCAAAATACCTGCATTAACC AGCGGCCCTTGGTGAAACCAGGTGAGGTCGTGGTAGCAGGTGATGTTCTGGCTGATGGTCCGTCAACAGACATGGGTGAA TTGGCCTTGGGGCAGAATCTTCTCGTGGCCTTTATGCCTTGGAATGGCTATAACTTCGAGGACTCAATCCTTATTTCCGA GCGGGTAGTGGAGGAAGAACGGTTTACTTCTATCCATATTGAAGAGTTGAGTTGCTTTGCGCGGGACACCAAGCTGGGTC CGGAAGAAATTAGCAGCGATATTCCTAATGTAAGCGAAGCGGCTCTATCCAAACTGGACGAGGCGGGTATCGTTTATATT GGGGCGGAGGTCAAACCCGGTGATATTTTGGTGGGCAAGGTGACCCCCAAGGGGGAGACCCAATTAACACCAGAGGAGAA GTTGCTGCGAGCCATTTTTGGGGAAAAGGCCTCTGACGTGAAGGACACTTCCCTGCGGGTCCCTTCGGGTATGCACGGCA CTGTGATCGATGTTCAGGTCTTTACCCGTGATGGCGTGGAAAAAGATTCGCGGGCTTTGCAGATAGAAGAGATGGAACTG GCTAAGATCAAAAAGGATTTGCGAGATGAGTTCCGTATCGTAGAAGCAGATATCTACCAACGCTTAGAAAAGGTTTTGGT GGGTAAGATTGCTGAAGGAGGGCCGGCAGGATTAGGCGCGGGCAGCAAGATCACAAAAAATTACCTTGCTGATTTGTCTA AGGATCGATGGTTTGAGATTCGGTTGCGCAGTGAGGAGGCGGATAAGCAGCTGGAATGGGCTGCTGGGCAACTTAAGGAG CAACGGGCTGCGATGGACGAAAAGTTCCAGCAGCAGCGGGCCAAGCTCACTTCCGGGCACGATCTCCCTCCCGGTGTCCA GAAGATGGTGAAGGTCTATTTGGCAGTAAAACGTCGCGTCCAACCCGGCGATAAGATGGCAGGCCGGCATGGGAACAAGG GCGTGATTTCTACTATCGTGCCTCTTGAAGACATGCCTTATATGGAAGATGGGACCCCGGTAGATATCGTCCTTAATCCC CTAGGGGTGCCTTCTCGGATGAATATTGGGCAGATCCTGGAGACTCATCTGGGGTGGGCAGCGAAAGGCCTAGGTCGAAA GATTGGCGCTCTCCTTGATTCCAGTTCAGAGCAGCAGGTTGTTGAATTACGTGCTTTTTTGGAGCAGGTATACAACACCA GTGGCAAGAAAGAAGAGTTAAGTTCTCTGAGCAATGGGGAAGTATTGGAACTGGCAAATAACCTGCGTAATGGTGTTCCT ATGGCAACGCCAGTATTCGATGGAGCTTCCGAGAAGGAAATCAAAGCGATGCTGGAGTTGGCTGATCTGCCTACCAACGG CCAAACCGCTCTTTATGATGGTCGAACAGGAGAAGCTTTCGCCCGCCCGGTAACGGTAGGGTATATGCATATGCTTAAGC TTAATCACTTGATTGATGACAAGATGCATGCTAGGTCGACTGGCCCTTATAGCTTAGTCACTCAGCAGCCTCTGGGTGGG AAAGCCCAGTTTGGTGGACAGCGTTTTGGTGAGATGGAGGTATGGGCACTGGAATCCTATGGGGCTGCCTATACTTTGCA GGAGATGCTCACTGTGAAATCTGATGATGTGAACGGGCGCACCAAGATGTATAAAAACATCGTGGATGGGGATTACCGAA TGGAAGCGGGTATGCCCGAGTCGTTTAATGTATTGACAAAGGAAATCCGCGCCCTCGGTATCGATATCGAACTGGAACAG GACTAA Protein sequence : MPYSLTEKKRIRKDFGKLYSILKTPFLLATQIDSFRNFLQMDAPPNKREDKGLHAAFQSVFPIKSYTEYAELQYVSYHLG TPSFDVKECQVRGLTYAAPLRVKLRLVIYDKEAPASEQVVKDVKEQEVYMGEIPLMTPKGNFVINGTERVIVSQLHRSPG VIFEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDCVYARIDRRRKLLATILLRALGYSTEEILMMFFETITVHHQG SAYLLDLLPQRLRGESLPFDIINPDGEVIVEAERRVTARHIKQMEKAGMETLSAPKEFLIGKTLARDLVDTDTGEVLARA NDEITAELMEAIEGADIQAFDLIYTNDLDRGPFISDTLRLDLTTTPLEAQMEIYRVMRPGEPPTKEAAQNLFQNLFFNPE RYDLSPVGRMKFNRRLGKEDITGLGVLSKEDIVDVIKTLIDIRNGYGSVDDVDHLGNRRVRSVGEMAENQFRVGLVRVER AVRERLSLAESEGLMPQELINAKPVSAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPT HYGRVCPIETPEGPNIGLINSLAVYARTNQYGFIETPYRKVVESKVTGEVEYLSAIEEGQYVIAQANATADEEGRLVDML VSCRHKNEFTLLPPEKVQYIDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRAETPLVGTGIEKVVARDSG VMVVARRGGIVDSVDAARVVVRVNDEETAADEPGVDIYNLTKYARSNQNTCINQRPLVKPGEVVVAGDVLADGPSTDMGE LALGQNLLVAFMPWNGYNFEDSILISERVVEEERFTSIHIEELSCFARDTKLGPEEISSDIPNVSEAALSKLDEAGIVYI GAEVKPGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMHGTVIDVQVFTRDGVEKDSRALQIEEMEL AKIKKDLRDEFRIVEADIYQRLEKVLVGKIAEGGPAGLGAGSKITKNYLADLSKDRWFEIRLRSEEADKQLEWAAGQLKE QRAAMDEKFQQQRAKLTSGHDLPPGVQKMVKVYLAVKRRVQPGDKMAGRHGNKGVISTIVPLEDMPYMEDGTPVDIVLNP LGVPSRMNIGQILETHLGWAAKGLGRKIGALLDSSSEQQVVELRAFLEQVYNTSGKKEELSSLSNGEVLELANNLRNGVP MATPVFDGASEKEIKAMLELADLPTNGQTALYDGRTGEAFARPVTVGYMHMLKLNHLIDDKMHARSTGPYSLVTQQPLGG KAQFGGQRFGEMEVWALESYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDYRMEAGMPESFNVLTKEIRALGIDIELEQ D |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 69 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 69 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Nhal_2378 | YP_003527853.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 73 |
| Nhal_2378 | YP_003527853.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 73 |
| Nhal_2378 | YP_003527853.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 69 |
| Nhal_2378 | YP_003527853.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 69 |
| Nhal_2378 | YP_003527853.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 69 |
| Nhal_2378 | YP_003527853.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 69 |
| Nhal_2378 | YP_003527853.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 69 |
| Nhal_2378 | YP_003527853.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 69 |
| Nhal_2378 | YP_003527853.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 69 |
| Nhal_2378 | YP_003527853.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 69 |
| Nhal_2378 | YP_003527853.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 69 |
| Nhal_2378 | YP_003527853.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 69 |
| Nhal_2378 | YP_003527853.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 69 |
| Nhal_2378 | YP_003527853.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 69 |
| Nhal_2378 | YP_003527853.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 68 |
| Nhal_2378 | YP_003527853.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 67 |
| Nhal_2378 | YP_003527853.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 66 |
