|
Name : SAR116_2384 (SAR116_2384) Accession : YP_003552711.1 Strain : Candidatus Puniceispirillum marinum IMCC1322 Genome accession: NC_014010 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta/140 kD subunit Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 2598574 - 2602752 bp Length : 4179 bp Strand : + Note : - DNA sequence : ATGGCATCGCATGTAAGTACCTTGGATAGTCGAAAGCGGGTTCGCCGTACGTTTGGGCAGTTGGAAGAAATCACCCCAAT GCCAAACCTGATTGATGTTCAGCGGTCAAGTTATGATACTTTTTTGCAGATGGATGTTCCGGTCCCTGATCGTATTGATC ACGGGTTGCAGGAAACCTTTAAATCAGTGTTCCCGATTGGGGATTTTGCTGGTCGTTCGATACTTGAATTTGTGTCTTAT GATCTTGAAAAACCAAAATATGATGTCGAAGAATGTCAACAGCGTGGGCTGACCTTTGCCTCGCCGCTGAAAGTGACCTT GCGACTGGTGGTCTGGGAAGAAGACGAAGACACAGGCGCGCGTTCAATCCGCGATATTAAGGAACAGGACGTCTATATGG GCGATCTGCCGCTGATGACATCTAACGGTACCTTTATTGTGAATGGCACCGAGCGTGTGATCGTTTCACAGATGCACCGT TCGCCTGGCGTGTTCTTTGACCATGACCGTGGCAAAACACATGCTTCGGGCAAATTGCTATTTGCTGCCCGCGTTATTCC TTATCGTGGGTCATGGCTGGATTTTGAATTTGATGCCAAAGATATTCTGAATGTGCGGATTGACCGCAAGCGCAAACTGC CATCTACCACCTTCATGATGGCTTTGCCCGATGCTGACTCATTGGCCTATATGGATGCCTGCGCCGAATCTGGCGAAGAC GTTGACCCAACGCGCATTGTTGGCATGAGCCGTGAAGAAATTCTTGGCTATTTCTACAATGCGGTTGACTATAAGCGTGA TGGTGATGGCTGGCGTTACGCGCTCAACCCTGAGGCACTAAAAGGTAGCCAACTGATACGCGATCTTGTTGATGCCGACA CCAAAAAGGTTGTTGCCAAAGCAGGCACAAAAATGACACCGCGCGCGCTGAAAAAGCTGGTCGAAGATGGCGTTAAAGAC GTTCTGGTGCCTGATACAGATGTTCTGGGCCGGTTCATTGCTGAAGACATCATCAATATGTCAACTGGCGAAGTCTATGC CGAAGCGGGTGAAGAAATCACCGAAGAGCTGATGGCACGCTTTGTGGAAAACGGCAATGATGATATCAGCATCTTGTTCA TCGATAATGTCAATTACGGTCCGCATCTGCGCAACACGCTTGCCGCTGACCGGAATACCTGCCGTGAAGAGGCGCTGGTT GATATTTATCGTGTTATGCGTCCGGGCGAGCCGCCAACATTGGAAAGCTCGCATGCTTTGTTCCAGAGCCTGTTTTTCAC ATCCGAGCGTTATGATCTGTCATCGGTTGGCCGGGTGAAGATGAATTCACGCCTTGAACTCGATACAGATGATTCTGTTC GTATCTTGCGCAAGCAGGACGTGATGGCGATCCTGAAAGTGCTGACAGGTCTGAAAGATGGTCGTGGCGATATTGACGAT ATTGACCATCTTGGTAACCGCCGGGTGCGTTCGGTTGGTGAATTGATGGAAAATCAGTACCGTGTGGGTCTGTTGCGGAT GGAACGTGCCATTCGCGAACGCATGGGCGCTGTTGAAATCGACACTGTTATGCCTGCCGATCTGATTAACGCCAAGCCGG CCGCTGCCGCTGTACGTGAATTTTTTGGATCATCGCAGCTGTCTCAATTTATGGATCAGACTAACCCCTTGTCTGAAATC ACCCATAAACGCCGTGTATCGGCGCTTGGGCCGGGCGGTCTGACCCGTGAACGTGCGGGCTTTGAAGTGCGCGACGTACA TCCAACGCATTATGGCCGGATTTGCCCGATTGAAACGCCTGAAGGCCCGAATATTGGTCTGATTAACTCGCTGGCAACCT ACGCCCAGATTAATCGTTACGGCTTTATTGAAACACCCTATCGCAAAGTTGTTGAGGGCAAGGTCACTGACGAAGTGCGT TATATCTCGGCGATGGAAGAAGGTCGCTACACAATTGCACAGGCGAATGCCGAACTTGATGCCAAGGGTGTATTTGTTGG TGAATTGATTCCGGTGCGTCGGGCTGGCGAAATCGGCCTTGCGCGTCCAACTGATATCGAACTGATGGACGTATCGCCAA AACAGCTAGTTTCGGTTGCTGCGGCGCTGATCCCGTTCCTCGAAAATGACGATGCGAACCGTGCCTTGATGGGGTCGAAC ATGCAACGTCAGGCTGTGCCTCTGGTGAAAGCCGAAGCCCCGATCGTGGGTACTGGAATGGAAGCCCGCGTTGCGCGTGA CTCGGGTGTGACCATTGTTGCCAAACGTGCTGGTGTGATCGATCAGGTCGATGCGACACGTATTGTTGTTCGTGCCAGCG AAGAAACCGCCGAAGATGTATCACCTGTTGATATATACAGCCTGCTGAAATTCCAGCGTTCGAACCAGAACACCACGGTC AACCAGCGTCCGCTTGTCAAAGTGGGTGATACGGTTCGTCGGGGTGATATCATCGCTGATGGCCCATCAACCGAAGACGG TGAATTGGCGCTTGGCCGGAACGTGCTTGTCGCCTTCATGCCGTGGAATGGGTACAACTTTGAAGATTCAATCCTGATTT CTGAGCGTATCGTCCGTGACGACGTATTCACCTCGATACATATCGAAGAATATGAAGTGATGGCACGTGATACAAAGCTT GGTCAGGAAGAGATCACCCGTGACATTCCTAATGTCGGTGAAGAAGCACTGAAGAATCTTGACGAGGCTGGCATTGTATA TGTCGGTGCCGAAGTCGGACCTAGTGATATTCTGGTTGGCAAGGTGACACCAAAAGGTGAATCACCAATGACACCGGAAG AAAAACTGCTCCGTGCCATTTTTGGTGAAAAGGCGTCCGACGTTCGTGATACCTCGCTGAAACTGCCACCTGGCGGTTCA GGCACGGTTGTCGAAGTGCGTGTGTTCTCTCGTCGTGGTGTTGAAAAAGACGAACGTGCGCTGGCCATTGACCGCGCTGA AATCGATCGTCTTGGCAAGGACCGTGATGACGAACGTAGCATTCTTGAGCGTGGTTTCTACGGCCGTATGACTGAACTCT TTGCTGGTCAGACAGTGGCTTCAGGTCCAAAAGGCGTGAAAGCAGGCACCAAAATCGATGATGCGTTGCTTGATGAACTG CCAAAATCACAATGGCAGCAGATCGCTGTTAAAGATGACAATGTGCAAAAGCTGATCGAAGCGCAGATTGCCAACTTTGA AAGTGCTGTTGCGGCTTTGCAGGCACGTTTCAATGATAAGGTTGACAAGCTTCAAGGTGGCGATGAATTGCTACCTGGCG TGATGAAGATGGTAAAGGTCTTTGTTGCCGTGAAGCGCAAGCTTCAGCCTGGTGACAAAATGGCTGGCCGTCATGGTAAC AAGGGTGTGATCTCACGGATCGTACCGGCTGAAGATATGCCGTATCTCGAAGATGGTACGCCGGTCGATATCGTGTTGAA CCCGCTTGGTGTGCCGTCACGAATGAATGTTGGTCAGATTTTGGAAACCCATCTTGGCTGGGCGGCGCGTGGTCTTGGTA AACAGGTTGGTGCGGCAGCTGAAGCGGCGCGTGCTAATGCAGATACCTCAAAGCTTCGCGATACCTTGTCAGGTATGTAT TCTGCTGAACAATATGAGAATGAGCTGGCCGTGATGGATGATGATCAGATCATTGAACAGGCCGAAATTCTTGGTCGTGG TGTGCCTATGGGAACGCCGGTATTTGATGGTGCGCGTGAAGCCGATGTCTTGGCTCTGCTGAAAAAGGCTGGGCTTAGCG AAACAGGTCAGGAATGGCTCACCGATGGACGTACAGGCGAGGTTTTCGACCGGGCGGTTACCGTTGGCTATATCTATATG CTGAAATTGCATCACCTTGTTGATGACAAGATTCACGCTCGTTCGATTGGTCCTTACTCGCTGGTTACACAGCAGCCACT TGGTGGTAAGGCACAGTTTGGTGGACAGCGCTTTGGTGAGATGGAGGTCTGGGCACTTGAAGCTTATGGTGCGGCCTACA CCTTGCAGGAAATGCTCACCGTCAAGTCGGATGACGTTTCAGGCCGGACAAAGGTTTACGAGGCTATTGTTCGCGGTGAT GACGACTTTGAATCTGGCATTCCGGAATCCTTCAATGTTTTGGTCAAAGAGCTTCGCTCACTTGGTTTGAATGTTGATTT GCATGAGGCAGAATACTAG Protein sequence : MASHVSTLDSRKRVRRTFGQLEEITPMPNLIDVQRSSYDTFLQMDVPVPDRIDHGLQETFKSVFPIGDFAGRSILEFVSY DLEKPKYDVEECQQRGLTFASPLKVTLRLVVWEEDEDTGARSIRDIKEQDVYMGDLPLMTSNGTFIVNGTERVIVSQMHR SPGVFFDHDRGKTHASGKLLFAARVIPYRGSWLDFEFDAKDILNVRIDRKRKLPSTTFMMALPDADSLAYMDACAESGED VDPTRIVGMSREEILGYFYNAVDYKRDGDGWRYALNPEALKGSQLIRDLVDADTKKVVAKAGTKMTPRALKKLVEDGVKD VLVPDTDVLGRFIAEDIINMSTGEVYAEAGEEITEELMARFVENGNDDISILFIDNVNYGPHLRNTLAADRNTCREEALV DIYRVMRPGEPPTLESSHALFQSLFFTSERYDLSSVGRVKMNSRLELDTDDSVRILRKQDVMAILKVLTGLKDGRGDIDD IDHLGNRRVRSVGELMENQYRVGLLRMERAIRERMGAVEIDTVMPADLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEI THKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATYAQINRYGFIETPYRKVVEGKVTDEVR YISAMEEGRYTIAQANAELDAKGVFVGELIPVRRAGEIGLARPTDIELMDVSPKQLVSVAAALIPFLENDDANRALMGSN MQRQAVPLVKAEAPIVGTGMEARVARDSGVTIVAKRAGVIDQVDATRIVVRASEETAEDVSPVDIYSLLKFQRSNQNTTV NQRPLVKVGDTVRRGDIIADGPSTEDGELALGRNVLVAFMPWNGYNFEDSILISERIVRDDVFTSIHIEEYEVMARDTKL GQEEITRDIPNVGEEALKNLDEAGIVYVGAEVGPSDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLKLPPGGS GTVVEVRVFSRRGVEKDERALAIDRAEIDRLGKDRDDERSILERGFYGRMTELFAGQTVASGPKGVKAGTKIDDALLDEL PKSQWQQIAVKDDNVQKLIEAQIANFESAVAALQARFNDKVDKLQGGDELLPGVMKMVKVFVAVKRKLQPGDKMAGRHGN KGVISRIVPAEDMPYLEDGTPVDIVLNPLGVPSRMNVGQILETHLGWAARGLGKQVGAAAEAARANADTSKLRDTLSGMY SAEQYENELAVMDDDQIIEQAEILGRGVPMGTPVFDGAREADVLALLKKAGLSETGQEWLTDGRTGEVFDRAVTVGYIYM LKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVRGD DDFESGIPESFNVLVKELRSLGLNVDLHEAEY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 57 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SAR116_2384 | YP_003552711.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_002516.2.881699.p | Protein | 0.0 | 59 |
| SAR116_2384 | YP_003552711.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_009085.4918494.p0 | Protein | 0.0 | 58 |
| SAR116_2384 | YP_003552711.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP000675.2.gene392.p | Protein | 0.0 | 58 |
| SAR116_2384 | YP_003552711.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP000034.1.gene3741. | Protein | 0.0 | 57 |
| SAR116_2384 | YP_003552711.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_002695.1.914942.p | Protein | 0.0 | 57 |
| SAR116_2384 | YP_003552711.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_010400.5987325.p0 | Protein | 0.0 | 57 |
| SAR116_2384 | YP_003552711.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_010410.6003841.p0 | Protein | 0.0 | 57 |
| SAR116_2384 | YP_003552711.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_011586.7046027.p0 | Protein | 0.0 | 57 |
| SAR116_2384 | YP_003552711.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_010611.6233925.p0 | Protein | 0.0 | 57 |
| SAR116_2384 | YP_003552711.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_011595.7060572.p0 | Protein | 0.0 | 57 |
| SAR116_2384 | YP_003552711.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 57 |
| SAR116_2384 | YP_003552711.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_008702.1.4609796. | Protein | 0.0 | 57 |
| SAR116_2384 | YP_003552711.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP001918.1.gene250.p | Protein | 0.0 | 56 |
| SAR116_2384 | YP_003552711.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP001138.1.gene4362. | Protein | 0.0 | 56 |
| SAR116_2384 | YP_003552711.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP004022.1.gene2794. | Protein | 0.0 | 56 |
| SAR116_2384 | YP_003552711.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP000647.1.gene4402. | Protein | 0.0 | 56 |
| SAR116_2384 | YP_003552711.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_011035.1.6448762. | Protein | 0.0 | 55 |
| SAR116_2384 | YP_003552711.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP001581.1.gene3846. | Protein | 0.0 | 48 |
