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Name : secD-1 (SVI_1576) Accession : YP_003556325.1 Strain : Shewanella violacea DSS12 Genome accession: NC_014012 Putative virulence/resistance : Unknown Product : protein-export membrane protein SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1811101 - 1812951 bp Length : 1851 bp Strand : + Note : - DNA sequence : GTGTTAAATAAATACCCAATGTGGAAAAATGTGATGGTGATTTGCATCATCGCAGTCGGTTTTTTCTATGCAATACCCAA TCTCTACAGTGAAGACTATGCGGTTCAGGTAGTTGGTACTCGTGGAGCTGAGGTGACTGTGGCGACTCAGTCGGCAGTCA ATGATGTGCTTACCAGTAAGAATATTACGGTTAAGCGTTCAGAGCTTGAAAATGGTCAATTGCTTGTTCGCGTGATGGAT GGTGATCAACAGTTACTAGCAAAGGAAGCAATAGCTGATGCGCTGGGGGACAAATACACCGTCGCCTTAAACTTAGCGCC AGCGACGCCTGAGTGGCTTGAGGCTATGGGCGGCTCCCCAATGAAGTTGGGTCTAGATTTACGTGGTGGCGTTCATTTTC TGATGGAAGTGAAAATGGGCGAAGCTGTTCGTAAAATGGTCGAGTCTAAAATGGCCGACTTTAGAACCGATCTTCGCGGT GAGCGTATTCGCTATGCCGGTATTCGTGAAAGTGCTAAAGGCATAGAGATTAAGTTCCGTGATGCCGACAACTTAGCTAA GGCTGAGCGTTTCTTGAAGAGCCGCGGTAATGACATGGTGTTTACCGATAGCTCATCGGATGGTAATTACTACTTGATTG CCAATCTCAGTGAAACCTATCTTAAGCAAGTTAAAGAGGAAGCACTGCAGCAGAACATCACGACTATACGTAATCGTGTG AATGAGTTGGGTGTGGCGGAGCCAGTTGTACAACGTCAAGGTGCCGAACGCATCATAGTCGAGTTACCTGGCGTGCAAGA TACAGCCCGTGCGAAAGAGATTTTAGGCGCTACCGCGTCAATCGAATTCCATATGGTTGATGAGAAAGCCGATGCTGCAG CTATTGCCAGTGGTCGAATCTCTGCCAATGCCAAGATATACGATCGTCGTCAAGGTGGCCAAGTCGCGCTCTATAAAGAG GTGATGTTGTCTGGTACCCATATTCAAGGAGCTCAGCCGAGTTTCGATGAATACAGTCGTCCTCAGGTTAGCATTAACTT AGATTCCAAGGGCGGTTCTATCTTCTCGAATGTGACTAAGGATAACATTGGTAAGCCAATGGCCACCTTGTTCATCGAGT ATAAAGATAATGGTGCTAAAAACCCCGATGGCAGCATAAAGCTTGAGAGGATTGAAGAGGTCATTTCAGTTGCCACGATT CAAGCACGTCTGGGACGTAACTTTGTAATCACTGGACTGGATCATAGTGAAGCGCAAAACCTAGCCTTACTTCTTCGTGC TGGTGCCTTAATTGCACCGGTTGTTATTGTAGAGGAACGTACCATAGGTCCGAGCCTAGGAGCGCAGAATATCCAAAACG GTATGGAAGCAATGATCTGGGGAATGGCAGTAGTGCTTATCTTCATGCTTGTTTATTACCGTGCTTTTGGTCTGATTGCC AACTTGGCGTTAACGGCAAACCTAGTCATGGTTGTCGGTGTTATGTCGATGATCCCTGGCGCAGTGTTAACTCTGCCTGG TATTGCCGGTATGGTATTGACCGTAGGTATGGCTGTGGATGGTAATGTTCTTATCTACGAGCGTATTCGTGAAGAGTTAA GAAACGGTCGTAGCGTGCAGCAAGCTATTCATGAAGGGTATGGCAATGCATTCTCAACCATTGCAGATGCTAACATCACC ACTTTTATGACAGCACTTATTTTGTTTGCCGTGGGTACAGGAGCGGTTAAAGGCTTCGCTGTGACTCTGATGATAGGTAT AGCGACGTCAATGTTTACCGCTATTGTGGGAACTCGTGCCATCGTCAACGCCGTTTGGGGTGGTAAACGCGTGAAGAAAT TGTCTATATAA Protein sequence : MLNKYPMWKNVMVICIIAVGFFYAIPNLYSEDYAVQVVGTRGAEVTVATQSAVNDVLTSKNITVKRSELENGQLLVRVMD GDQQLLAKEAIADALGDKYTVALNLAPATPEWLEAMGGSPMKLGLDLRGGVHFLMEVKMGEAVRKMVESKMADFRTDLRG ERIRYAGIRESAKGIEIKFRDADNLAKAERFLKSRGNDMVFTDSSSDGNYYLIANLSETYLKQVKEEALQQNITTIRNRV NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDEKADAAAIASGRISANAKIYDRRQGGQVALYKE VMLSGTHIQGAQPSFDEYSRPQVSINLDSKGGSIFSNVTKDNIGKPMATLFIEYKDNGAKNPDGSIKLERIEEVISVATI QARLGRNFVITGLDHSEAQNLALLLRAGALIAPVVIVEERTIGPSLGAQNIQNGMEAMIWGMAVVLIFMLVYYRAFGLIA NLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRNGRSVQQAIHEGYGNAFSTIADANIT TFMTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRAIVNAVWGGKRVKKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 4e-124 | 48 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 4e-124 | 48 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 4e-124 | 48 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 4e-124 | 48 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 4e-125 | 48 |
