Gene Information

Name : cat (SVI_3074)
Accession : YP_003557823.1
Strain : Shewanella violacea DSS12
Genome accession: NC_014012
Putative virulence/resistance : Resistance
Product : chloramphenicol acetyltransferase
Function : -
COG functional category : R : General function prediction only
COG ID : COG0110
EC number : -
Position : 3479906 - 3480532 bp
Length : 627 bp
Strand : -
Note : -

DNA sequence : 
TTGAACAATTATTTTGAAAGTCCTTTCGTCGGGAAGTCACTGAAAGAACAGGTGACGAATCCTAATATCATAGTGGGTGA
GCATAGTTATTATTCCGGCTATTATCATAATCATAGCTTCGATGAATGTGCACGTTATCTGCTGGCTGACAGAAGTGATA
TTGATAAGTTAATTATTGGTAGTTACTGTTCAATTGGCTCAGGTGCTGTATTTATGATGGCAGGCAATCAGGGACATCAA
AATAATTGGGTTAGCACATTCCCATTTTTCTACCAAGATAATGAAAATTTCTCTGATGCTAAAGATGGTTTTGAACGCTC
TGGTGATACCCTTATTGGTAACGATGTTTGGATAGGCACTGAAGCCATGATCATGAGCGGTGTAACAGTGGGTGACGGTG
CTATTATTGCAAGTCGTGCTGTCGTAACCAAAGACGTTGCGCCTTACTCCATCGTTGGTTCAAACCCTGCAAAACATATC
CGCTATCGTTTTACTGAAAGTGAAATCCTTCAGTTACTAGAAATGAAATGGTGGCTGTGGAATGACGAGAAAATTAAAGG
TGCAATGAGCTTAATGTGCTCGTCAGATATCAGTGGTCTTTATGATTATTGGAAAATTAGCAAATAA

Protein sequence : 
MNNYFESPFVGKSLKEQVTNPNIIVGEHSYYSGYYHNHSFDECARYLLADRSDIDKLIIGSYCSIGSGAVFMMAGNQGHQ
NNWVSTFPFFYQDNENFSDAKDGFERSGDTLIGNDVWIGTEAMIMSGVTVGDGAIIASRAVVTKDVAPYSIVGSNPAKHI
RYRFTESEILQLLEMKWWLWNDEKIKGAMSLMCSSDISGLYDYWKISK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
catB8 YP_005797132.1 chloramphenicol acetyltransferase Not tested AbaR4e Protein 2e-62 67
catB3 AET25385.1 chloramphenicol acetyltransferase Not tested PAGI-2(C) Protein 2e-61 67
catB3 AFG30108.1 chloramphenicol acetyltransferase Not tested PAGI-2 Protein 2e-61 67

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cat YP_003557823.1 chloramphenicol acetyltransferase AY123251.gene2.p01 Protein 7e-63 67
cat YP_003557823.1 chloramphenicol acetyltransferase AY740681.1.gene5.p01 Protein 8e-62 67
cat YP_003557823.1 chloramphenicol acetyltransferase AF322577.2.gene4.p01 Protein 8e-62 67
cat YP_003557823.1 chloramphenicol acetyltransferase NC_002516.2.878374.p Protein 2e-60 65
cat YP_003557823.1 chloramphenicol acetyltransferase JF268688.1.gene6.p01 Protein 1e-59 64
cat YP_003557823.1 chloramphenicol acetyltransferase AM180355.1.gene2499. Protein 3e-30 49
cat YP_003557823.1 chloramphenicol acetyltransferase CP001581.1.gene990.p Protein 9e-38 47
cat YP_003557823.1 chloramphenicol acetyltransferase NC_011595.7057349.p0 Protein 3e-26 42
cat YP_003557823.1 chloramphenicol acetyltransferase NC_010410.6000796.p0 Protein 3e-26 42