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Name : ccmF (SVI_4127) Accession : YP_003558876.1 Strain : Shewanella violacea DSS12 Genome accession: NC_014012 Putative virulence/resistance : Unknown Product : cytochrome c-type biogenesis protein CcmF Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG1138 EC number : - Position : 4732966 - 4734945 bp Length : 1980 bp Strand : - Note : - DNA sequence : ATGATCCCAGAGTTAGGACACATATCGCTAATAATAGGTTTGGCATTTGCCTTCCTGTTAGCTTGCGTTCCTTTAATTGG TGTTGCACGTAAAGACCAATACTTAGTGCGATATGCTTGGCCGTTAACCTATGGCATGTTTTTCTTTATCGCCGTATCGG TTATCGTTCTGGGTTATAGTTTTGCGGTTGATGATTTCTCAGTTGCTTATGTAGCACATCATTCAAACTCTCAACTACCT ATCTTCTTTAAGATAGCAGCAGTATGGGGGGGACATGAAGGTTCTTTACTCTTCTGGGTGTTTGCATTATCAGGCTGGAC TGCAGCGGTTGCATTTTTCAGTAAAAGCCTAGAAGAGGTATTTACTGCCCGAGTACTCTCCGTGCTGGCCTTTATTGTTG TGGGTTTTGCATTGTTCATGATCTTAACCTCAAACCCTTTCGAGCGCTTATTTCCTACTCCTATGGAGGGCCGTGATCTA AACCCTATGTTGCAAGACGTTGGTCTGATCTTCCACCCACCTATGTTATATCTTGGTTATGTTGGCTTCTCTGTGAGCTT CGCCTTCGCTATTTCAGCCTTGATGGGGGGCAGTCTAGATTCAGCATGGGCTCGCTGGAGTCGTCCTTGGACATTGGCAG CTTGGGTATTTCTAACCGGTGGTATCTCTCTTGGGTCTTGGTGGGCTTATTATGAATTAGGTTGGGGTGGTTGGTGGTTC TGGGATCCTGTTGAGAATGCTTCTTTCATGCCTTGGTTAGTCGGTACCGCATTGCTCCATTCGGTTATCGTTACCGAGAA ACGTGCGGCATTCCGTAACTGGACAGTACTACTGTCTATAACCGCATTCTCGTTAAGCTTGTTAGGTACATTTATTGTTC GTTCAGGAGTGCTTACTTCGGTGCACTCCTTTGCCTCAGATCCTAGTCGAGGCATGTTTATTTTGCTGTTACTAGGCTTA GCTGTAGGTGGCTCTTTGACACTATTCGCTTTCAGAGCGAGTCAAATGAAGAGTCCGGCACGTTTCGACTTATGGTCTAG AGAAACTATGCTGCTTGTGTGTAATATTTTGCTCACAGTGGCATGTGGTACCGTACTTCTTGGTACCCTCTATCCGCTAC TTATAGATGCCTTAAATATGGGTAAAATCTCAGTAGGACCACCATACTTTAATGCTGTATTTGTACCCATTATTCTGGTG TTGTTTGTCTTTATGGGTATAGGCCCGAACATTCGTTGGAAGAAAGCTAAACCTGGTGCTGTACAGGCTAAAGTTCTGGT TCCTGCCCTGGTTGCTATTATCGTCGGTGTGGCAGTGCCATTCCTAGCCGATGGAAAGTTCAATACTTGGGTCGCCTTGG GTATAGCAGCAGCAACCTGGATCACGCTTACTACACTTAGAGCCGGATATGATTTGATTAAATCGAAAGATGGCTCTCTC AGTCTGGCTCGTTTAGGTCGTAGCCAATTGGGTATGCTCATCGCTCACTTAGGCATAGCGGTATCTGTTGTGGGTGGCAC TATGGTTTCAAACTACTCTATCGAGAAGAGTGTACGTATGGGGCCTGGTATCAGCCAGGAATTAGCTGGGTATACATTTA GCTTTATCGAAATTAAAAATGTCGTTGGCCCTAATTACACTGCTCAACAAGGGCAGATTGAAGTGTATAAAGATGGTGAC TTCATCACCTTACTAAAGCCAGATCGTCGTCAGTACAATGTACGTACTATGGATATGACGGAAGCGGGTATCGACTGGGG ACTCTTCCGTGATTTATATGTCACCATGGGAGATCCAATTAGTCCTACCGAGTTCGCTGTACGTATTAACTATAAGCCAT TTGTGCGTTGGTTATGGTTCGGCAGCATATTTATGATGGTTGGTGGTTTCTTTGCTGCATCTGACAAACGTTATCGTGCC AAGAAAGTAACGCAAACATCTAAGCTTGACGCGGAAAAAGAGAAATTGGCTACGGCCTAA Protein sequence : MIPELGHISLIIGLAFAFLLACVPLIGVARKDQYLVRYAWPLTYGMFFFIAVSVIVLGYSFAVDDFSVAYVAHHSNSQLP IFFKIAAVWGGHEGSLLFWVFALSGWTAAVAFFSKSLEEVFTARVLSVLAFIVVGFALFMILTSNPFERLFPTPMEGRDL NPMLQDVGLIFHPPMLYLGYVGFSVSFAFAISALMGGSLDSAWARWSRPWTLAAWVFLTGGISLGSWWAYYELGWGGWWF WDPVENASFMPWLVGTALLHSVIVTEKRAAFRNWTVLLSITAFSLSLLGTFIVRSGVLTSVHSFASDPSRGMFILLLLGL AVGGSLTLFAFRASQMKSPARFDLWSRETMLLVCNILLTVACGTVLLGTLYPLLIDALNMGKISVGPPYFNAVFVPIILV LFVFMGIGPNIRWKKAKPGAVQAKVLVPALVAIIVGVAVPFLADGKFNTWVALGIAAATWITLTTLRAGYDLIKSKDGSL SLARLGRSQLGMLIAHLGIAVSVVGGTMVSNYSIEKSVRMGPGISQELAGYTFSFIEIKNVVGPNYTAQQGQIEVYKDGD FITLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPISPTEFAVRINYKPFVRWLWFGSIFMMVGGFFAASDKRYRA KKVTQTSKLDAEKEKLATA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ccmF | AAN62106.1 | putative cytochrome C-type biogenesis protein CcmF | Not tested | PAGI-2(C) | Protein | 6e-144 | 55 |
| ccmF | YP_217241.1 | cytochrome c-type biogenesis protein | Not tested | SPI-12 | Protein | 1e-128 | 50 |
