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Name : rpoB (PRU_2135) Accession : YP_003575406.1 Strain : Prevotella ruminicola 23 Genome accession: NC_014033 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 2562376 - 2566188 bp Length : 3813 bp Strand : - Note : identified by similarity to SP:O52271; match to protein family HMM PF00562; match to protein family HMM PF04560; match to protein family HMM PF04561; match to protein family HMM PF04563; match to protein family HMM PF04565; match to protein family HMM TIG DNA sequence : ATGGCTTCAAAAATAATAGATAACAGAGTAAACTTTGGCAGCGTCAAAAATCCGATGCCATTCCCGGATTTCCTTGATGT GCAATTAAAGTCGTTCAAAGACTTCCTGCAGTTGGATACTCCGCCTGAGGAACGCAAGAATGACGGCTTGTATAAGGTGT TCGCTGAGAACTTCCCTATCACCGATACACGTAATAATTTCGTTCTTGAGTTCTTGGATTACTATATCGACCCACCTCGT TACAGCATCGATGAGTGCTTGGAGCGTGGTTTGACTTATAGCGTGCCCCTGAAGGCTAAGCTGAAACTGTATTGTACTGA TCCGGATCATGAGGATTTCGGAACTGTGATTCAGGATGTGTTCCTGGGTCCTATCCCTTACATGACCGCCAATGGTACAT TCGTTATCAATGGAGCCGAGCGCGTAGTCGTTTCACAGTTGCACCGTTCACCTGGCGTATTCTTCGGCCAGAGCGTACAT GCTAACGGTACCCTGCTGTATTCGGCTCGTGTTATCCCATTCAAGGGTTCATGGATCGAGTTTGCTACCGACATCAACAA TGTGATGTACGCATACATCGACCGTAAGAAGAAGTTGCCCGTAACAACTCTGCTGCGTGCTATCGGTTTCGAGGCCGATA AGGACATCCTGCAGATCTTCAACCTGGCCGAGGAGGTTAAGGTTAACAAGAAGAGCCTGAAGGCTGTGATTGGCTGCAAG CTTGCTGCCCGCGTACTGAAGAGCTGGAACGAGGACTTCGTTGATGAGGATACTGGTGAGGTAGTATCAATCGAGCGTAA CCAGATGATTATGGAGCGTGAGACTGAGATTACCGAGGAGAACATGATGGACATCCTTGAGAGTGGCGCACAGACTATCC TGGTGCACAAGGACGCATCTGTTGCTTCGGATTACAGCATCATCTTCAACACACTGGCCAAAGACCCATCTAACTCTGAG AAGGAGGCTGTGCTTTACATCTACCGTCAGCTGCGTAATGCCGATCCTGCCGATGATGCCAGCGCACGTGAGGTTATCCA GAACCTGTTCTTCTCAGACAAGCGTTACGATCTGGGTGATGTTGGTCGTTACCGTATCAACAAGAAGCTTGGTTTGAACA CCGATATGGATGTTCGCGTTCTGACCAAGGAAGATATTATCGAGATTATCAAGTATCTGATTCAGTTGGTTAACTCTAAG GCTACTGTCGACGATATCGACCACCTGTCGAACCGTCGCGTACGTACCGTAGGCGAGCAGCTGGCTAATCAGTTCTCTAT AGGTCTGGCTCGTATGAGCCGTACCATCCGTGAGCGCATGAACGTTCGCGATAACGAGGTGTTCACACCAACCGATCTGA TCAACGCCAAGACTATCTCTAGCGTTATCAACTCGTTCTTCGGTACCAACCCTCTGTCGCAGTTCATGGACCAGACCAAC CCTCTGGCCGAGGTTACTCACAAGCGTCGTCTCTCAGCCCTGGGTCCTGGTGGTCTGAGCCGTGAGCGCGCCGGATTCGA GGTTCGTGACGTACACTATACACACTATGGTCGTCTGTGTCCTATCGAGAGCCCTGAGGGACCAAACATCGGTCTGATCT CATCTCTCTGTGTATATGCTAAGATCAACGAGCTCGGATTTATCCAGACTCCTTACCGTAAGGTAGAGAATGGTGTTGCC GACCTGAGCGACAATGGTATCGTTTACCTCACCGCAGAGGAGGAGGCTGAGCACATCATCGGTCAGGGTAACGCACCTCT GAACGACGATGGTACATTTATCCGCTCGGTTGTTAAGTGTCGTCAGGATGCCGACTTCCCTGTAGTTCCACCTACAGACG TTGACCTGATGGATGTATCGCCACAGCAGATTGCCTCTATCGCTGCATCTCTTATCCCATTCCTGGAGCACGACGATGCT CACCGTGCGCTGATGGGATCTAACATGATGCGCCAGGCCGTACCTCTGCTGCACAACGAGGCACCTATCGTAGGTACCGG TATCGAGAAGCAGGTATGTGAGGATTCACGTACCATGGTTACTGCCGAGGGTGATGGTGTTATCGAGTACGTTGATGCTA CAACCATCCGTATTCTGTACGATCGCACCGAGGACGAGGAGTTCGTAAGCTTCGAGCCCGCCCTGAAGGAGTACCGTATC GCTAAGTTCCGTCGTACCAACCAGAATATGACCATCGACCTGCGTCCTATCTGTGAGAAGGGACAGCGCGTAAAGGCCGG TGATATCCTGACTGAGGGTTACGCTACCGAGGATGGTGAGCTGGCTCTGGGCCGTAACCTGCTGGTAGCTTACATGCCTT GGAAGGGTTACAACTATGAGGATGCTATCGTGCTTAACGAGCGCATTGTTCGCGACGACGTACTTACCTCTGTACACGTT GATGAGTACTCACTCGATGTACGTGAGACCAAGCGTGGTGTTGAGGAGTTCACAGCTGATATTCCTAACGTAAGTGAGGA GGCCACAAAGGATTTGGACGACAACGGTGTTATCCGTGTTGGTGCCCGTGTTGAGCCAGGCGACATCCTGATTGGTAAGA TTTCACCTAAGGGTGAGAGCGATCCTTCACCTGAGGAGAAGCTGCTCCGTGCCATCTTCGGTGACAAGGCTGGTGATGTG AAGGATTCTTCACTCAAGGCTAACCCATCACTGAGTGGTGTTATTATTGATAAGAAGATGTTCCAGCGTGCCATCAAGGA CCGTAAGTCTAAGCAGCAGGATAAGATCGTGCTTGCTAAGATCGACGAGGAGTACGAGGCAAAGGTTGAGGACCTGAAGG ATATCCTGATCGACAAGCTCATGGAGCTCACTAAGGGTAAGACCTCACAGGGTGTTAAGGACTACACCGGTGCCGAGATC ATCACCAAGGGTAGCAAGTTCACTGCTACAGCCCTGCGCAACCTTGAGTATGGCGATGTACAGATTAGCAACTGGACAAC AGACGAGCATAAGAACGAGCTGATTGCCAAGCTGATTATCAACTTCATGAAGAAGTACAAGCTGCTTGATGCTGAGATGA AGCGTAAGAAGTTCGCTATCACAATCGGTGACGAGCTGCCAAACGGCATCCTGCAGATGGCTAAGGTATATGTAGCTAAG AAGCGTAAGATCGGCGTAGGTGATAAGCTGGCCGGACGTCACGGTAACAAGGGTATCGTATCTAAGATCGTACGTCAGGA GGATATGCCATTCCTCGAGGATGGTCGTCCAGTCGACCTGGTACTGAACCCTCTGGGTGTGCCTTCTCGAATGAACCTTG GTCAGATTTTCGAGGCTATCCTCGGTGCTGCCGGTAAGAAGCTCGGTGTTAAGTTCGCTACACCTATCTTCGACGGTGCT AAGCTCGAAGACCTTGCTGAGTGGACTGACAAGGCAGGTCTGCCACGCCTGTGCTCTACCCACCTGTATGATGGTGAGAC CGGTGAGCGTTTCGACCAGCCTGCTACAGTAGGTATCACCTACTTCCTTAAGCTCGGTCACATGGTTGAGGATAAGATGC ACGCCCGTTCAATCGGTCCGTACAGCTTGATTACTCAGCAGCCTCTTGGTGGTAAGGCCCAGTTCGGTGGTCAGCGATTC GGAGAGATGGAGGTTTGGGCCCTCGAGGCCTTCGGCGCCAGCCATGTTCTTCAGGAGATCCTGACAATCAAGTCGGATGA TACCGTAGGTCGCTCTAAGGCTTACGAGGCTATCGTTAAGGGCGAGCCAATGCCTACACCAGGTATCCCCGAGTCTCTCA ATGTGCTGCTGCACGAGTTGCGTGGTCTTGGTTTGAGTATTACCCTCGACTAA Protein sequence : MASKIIDNRVNFGSVKNPMPFPDFLDVQLKSFKDFLQLDTPPEERKNDGLYKVFAENFPITDTRNNFVLEFLDYYIDPPR YSIDECLERGLTYSVPLKAKLKLYCTDPDHEDFGTVIQDVFLGPIPYMTANGTFVINGAERVVVSQLHRSPGVFFGQSVH ANGTLLYSARVIPFKGSWIEFATDINNVMYAYIDRKKKLPVTTLLRAIGFEADKDILQIFNLAEEVKVNKKSLKAVIGCK LAARVLKSWNEDFVDEDTGEVVSIERNQMIMERETEITEENMMDILESGAQTILVHKDASVASDYSIIFNTLAKDPSNSE KEAVLYIYRQLRNADPADDASAREVIQNLFFSDKRYDLGDVGRYRINKKLGLNTDMDVRVLTKEDIIEIIKYLIQLVNSK ATVDDIDHLSNRRVRTVGEQLANQFSIGLARMSRTIRERMNVRDNEVFTPTDLINAKTISSVINSFFGTNPLSQFMDQTN PLAEVTHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCVYAKINELGFIQTPYRKVENGVA DLSDNGIVYLTAEEEAEHIIGQGNAPLNDDGTFIRSVVKCRQDADFPVVPPTDVDLMDVSPQQIASIAASLIPFLEHDDA HRALMGSNMMRQAVPLLHNEAPIVGTGIEKQVCEDSRTMVTAEGDGVIEYVDATTIRILYDRTEDEEFVSFEPALKEYRI AKFRRTNQNMTIDLRPICEKGQRVKAGDILTEGYATEDGELALGRNLLVAYMPWKGYNYEDAIVLNERIVRDDVLTSVHV DEYSLDVRETKRGVEEFTADIPNVSEEATKDLDDNGVIRVGARVEPGDILIGKISPKGESDPSPEEKLLRAIFGDKAGDV KDSSLKANPSLSGVIIDKKMFQRAIKDRKSKQQDKIVLAKIDEEYEAKVEDLKDILIDKLMELTKGKTSQGVKDYTGAEI ITKGSKFTATALRNLEYGDVQISNWTTDEHKNELIAKLIINFMKKYKLLDAEMKRKKFAITIGDELPNGILQMAKVYVAK KRKIGVGDKLAGRHGNKGIVSKIVRQEDMPFLEDGRPVDLVLNPLGVPSRMNLGQIFEAILGAAGKKLGVKFATPIFDGA KLEDLAEWTDKAGLPRLCSTHLYDGETGERFDQPATVGITYFLKLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRF GEMEVWALEAFGASHVLQEILTIKSDDTVGRSKAYEAIVKGEPMPTPGIPESLNVLLHELRGLGLSITLD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 48 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_003575406.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 48 |
| rpoB | YP_003575406.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 48 |
| rpoB | YP_003575406.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 48 |
| rpoB | YP_003575406.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 48 |
| rpoB | YP_003575406.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 48 |
| rpoB | YP_003575406.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 48 |
| rpoB | YP_003575406.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 48 |
| rpoB | YP_003575406.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 46 |
| rpoB | YP_003575406.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 44 |
| rpoB | YP_003575406.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 43 |
| rpoB | YP_003575406.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 42 |
