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Name : Cseg_0741 (Cseg_0741) Accession : YP_003591866.1 Strain : Caulobacter segnis ATCC 21756 Genome accession: NC_014100 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 773483 - 777553 bp Length : 4071 bp Strand : + Note : TIGRFAM: DNA-directed RNA polymerase, beta subunit; KEGG: ccs:CCNA_00536 DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 2; DNA-directed RN DNA sequence : ATGGCGCAATCCTTCACCGGCAAGAAGCGGATCCGGAAGTCGTTCGGCCGCATTCCCGAGGCTGTGCAGATGCCGAACCT CATCGAGGTTCAGCGCTCCTCCTACGAGCAGTTCCTTCAGCGCGAGGTCCGTCCGGGCCAACGCCGCGACGAGGGCGTCG AGGCGGTCTTCAAGTCGGTGTTCCCGATCAAGGACTTCAACGAACGCGCCGTCCTGGAATACGTTTCGTACGAGTTCGAA GAGCCCAAGTACGACGTCGAGGAATGCATCCAGCGCGACATGACCTTCGCCGCGCCGCTGAAGGTCAAGCTGCGCCTGAT CGTCTTTGAAACCGAAGAAGAAACCGGCGCCCGCTCGGTCAAGGACATCAAGGAGCAGGACGTCTACATGGGCGACATCC CGCTCATGACGGACAAGGGCACCTTCATCGTCAACGGCACCGAGCGCGTCATCGTCTCGCAGATGCACCGCTCGCCGGGC GTGTTCTTCGACCACGACAAGGGCAAGACCCACGCCTCGGGCAAGCTGCTGTTCGCCGCCCGCGTGATCCCGTACCGCGG CTCGTGGCTGGACTTCGAGTTCGACGCCAAGGACATCGTCTACGTCCGCATCGACCGCCGCCGTAAGCTGCCGGCCACGA CCTTCCTCTATGCCCTGGGCATGGACGGCGAAGAGATCCTGACCACGTTCTACGACGTCGTCCCGTTCGAAAAGCGCGCG GGCGGCTGGGCCACCCCGTACAAGCCCGAGCGCTGGCGCGGCGTGAAGCCGGAGTTCCCGCTGGTCGACGCCGACACCGG CGAGGAAGTCGCTCCGGCCGGCACCAAGATCACCGCTCGCCAGGCCAAGAAGTTCGCCGACGGCGGCCTGAAGACCCTGC TGCTGGCGCCGGAAGCCCTGACGGGCCGCTACCTGGCCCGCGACGCGGTCAATGTCGGCACCGGCGAGATCTACGCCGAA GCCGGCGACGAGCTGGACGTCCCGACGATCCAGGCCCTGGCCGATCAAGGCTTCAGCACCATCGACGTGCTGGACATCGA CCACGTCACGGTCGGCGCCTACATGCGCAACACCCTGCGCGTGGACAAGAACGCCATCCGCGAGGACGCGCTGTTCGACA TCTATCGCGTCATGCGTCCGGGCGAGCCGCCGACGGTGGAAGCCGCCGAGGCGATGTTCAAGTCGCTGTTCTTCGACTCC GAGCGCTACGACCTGTCGTCGGTGGGCCGCGTGAAGATGAACATGCGTCTCGAGCAGGACGTGTCGGACGAAGTCCGCAT CCTGCGCAAGGAAGACGTCCTGGCCGTGCTGAAGGTCCTGGTGGGCCTGCGCGACGGTCGCGGCGAAATCGACGACATCG ACAACCTGGGCAACCGCCGGGTCCGCTCGGTGGGCGAACTGCTGGAAAACCAGTACCGCGTCGGCCTGCTGCGCATGGAA CGCGCCATCAAGGAACGCATGTCGTCCGTCGACATCGACACCGTGATGCCGCACGACCTGATCAACGCGAAGCCCGCCGC CGCCGCCGTTCGTGAATTCTTCGGCTCCTCGCAGCTGTCGCAGTTCATGGACCAGACGAACCCGCTGTCGGAAATCACCC ACAAGCGTCGTCTGTCGGCCCTCGGCCCGGGCGGTCTGACCCGCGAACGCGCCGGCTTCGAAGTCCGCGACGTGCACCCG ACCCACTACGGCCGGATCTGCCCGATCGAGACGCCGGAAGGTCCGAACATCGGTCTGATCAACTCGCTGGCCACGCACGC CCGCGTGAACAAGTACGGCTTCATCGAGAGCCCGTACCGTCGCGTGAAGGACGGCAAGCCGCTGGACGAAGTCGTCTACA TGTCGGCGATGGAAGAGTCGAAGCACGTCATCGCCCAGTCGAACATCAAGGTCGACGCCGGCGAGATCGTGGAAGACCTG GTTCCGGGCCGCATCAACGGCGAACCGACCCTCCTGCAAAAGGAGACGGTGGACCTGATGGACGTGTCGCCGCGCCAAGT CGTGTCGGTCGCCGCCGCCCTGATCCCGTTCCTGGAAAACGACGACGCCAACCGCGCCCTCATGGGCTCGAACATGCAAC GTCAGGCCGTGCCGCTGGTGCAGTCCGACGCCCCGCTGGTCGGCACCGGCATGGAAGCCGTCGTCGCCCGTGACTCGGGC GCCGTCGTGATCGCCAAGCGCACCGGCGTGGTCGAGCAGATCGACGGCACGCGTATCGTCATCCGCGCCACCGAAGAAAC TGACGCGGCCCGCTCGGGCGTCGACATCTACCGGATGTCGAAGTTCCAGCGTTCGAACCAGTCGACCTGCATCAACCAGC GTCCGCTGGTGAAGGTGGGCGACAAGATCGTCGCCGGCGACATCATCGCCGACGGTCCGTCGACGGAGCTGGGCGAACTG GCCCTGGGCCGCAACGCGCTCGTCGCGTTCATGCCCTGGAACGGCTACAACTTCGAAGACTCGATCCTGATCTCCGAACG CATCGTCCGCGACGACGTCTTCACCTCGATCCACATCGAGGAATTCGAGGTCATGGCCCGCGACACGAAGCTGGGTCCGG AAGAAATCACCCGCGACATCCCGAACGTCGGCGAGGAAGCCCTGCGCAACCTCGACGAAGCCGGCATCGTGGCGATCGGC GCCGAAGTCCAGCCGGGCGACATCCTGGTCGGCAAGGTCACGCCGAAGGGCGAAAGCCCGATGACGCCGGAAGAAAAGCT TCTGCGCGCCATCTTCGGTGAAAAGGCTTCGGACGTCCGCGACACCAGCCTGCGCCTGCCCCCGGGCGTCGCCGGCACGA TCGTCGACGTGCGCGTCTTCAACCGTCACGGCGTCGACAAGGACGAACGCGCCCTGGCCATCGAACGCGCCGAGATCGAC CGTCTGGGCAAGGACCGCGACGACGAGTTCGCGATCCTGAACCGCAACATCTCGGGCCGCCTGCGCGAACTGCTGATCGG CAACGTCGCTCTGTCGGGCCCCAAGGGCCTGTCGCGCGGCGAGATCACCGCCGACGCGCTGTCGCAGATCCAGCCGGGCC TGTGGTGGCAGATCGCCCTGGAAGACGAAAAGGCGATGGGCGAACTGGAAAGCCTGCGCCGCCTGTTCGACGAGAACCGC AAGCGCCTCGACCGTCGTTTCGAAGACAAGGTCGACAAGCTGCAGCGCGGCGACGAACTGCCTCCGGGCGTGATGAAGAT GGTCAAGGTCTTCGTGGCCGTGAAGCGCAAGCTTCAGCCGGGCGACAAGATGGCCGGCCGTCACGGCAACAAGGGCGTCA TCTCGCGCATCCTGCCGATCGAGGACATGCCGTTCCTCGCCGACGGCACGCACGTCGACGTCGTTCTGAACCCGCTGGGC GTGCCTTCGCGCATGAACGTCGGTCAGATCTTCGAAACCCACCTGGGCTGGGCCTGCGCCAATCTCGGCAAGCAGATCAC CAACCTGATGGAAGACTGGCAGGCCGGCGGTCAGAAGCAGGCGCTCATCGATCGCCTGCGCGACATCTACGGTCCGGACG AAGAGCTGCCGGAAACCGAAGAAGAGCTGATCGAGCTGGCCAAGAACCTGGGCAAGGGCGTTCCGATCGCCACCCCGGTG TTCGACGGCGCGCGCATGAGCGACATCGAGGACCACCTCGAAATGGCCGGCGTCAACAAGTCGGGCCAGTCGATCCTGTA CGACGGTCTGACCGGCGAGCAGTTCAAGCGTCCGGTCACGGTCGGCTACATCTACATGCTGAAGCTGCACCACCTGGTCG ACGACAAGATCCACGCCCGTTCGATCGGTCCGTACTCGCTCGTCACGCAACAGCCGCTGGGTGGTAAGGCCCAGTTCGGC GGTCAGCGCTTCGGGGAAATGGAAGTGTGGGCTCTGGAAGCCTACGGCGCGGCCTACACCCTGCAGGAAATGCTGACGGT GAAGTCCGACGACGTGGCCGGCCGGACCAAGGTCTACGAGTCGATCGTCCGCGGCGACGACACGTTCGAAGCCGGTATCC CGGAAAGCTTCAACGTGCTGGTCAAGGAAATGCGCTCGCTCGGCCTGAACGTCGAGCTGGAGAACAGCTGA Protein sequence : MAQSFTGKKRIRKSFGRIPEAVQMPNLIEVQRSSYEQFLQREVRPGQRRDEGVEAVFKSVFPIKDFNERAVLEYVSYEFE EPKYDVEECIQRDMTFAAPLKVKLRLIVFETEEETGARSVKDIKEQDVYMGDIPLMTDKGTFIVNGTERVIVSQMHRSPG VFFDHDKGKTHASGKLLFAARVIPYRGSWLDFEFDAKDIVYVRIDRRRKLPATTFLYALGMDGEEILTTFYDVVPFEKRA GGWATPYKPERWRGVKPEFPLVDADTGEEVAPAGTKITARQAKKFADGGLKTLLLAPEALTGRYLARDAVNVGTGEIYAE AGDELDVPTIQALADQGFSTIDVLDIDHVTVGAYMRNTLRVDKNAIREDALFDIYRVMRPGEPPTVEAAEAMFKSLFFDS ERYDLSSVGRVKMNMRLEQDVSDEVRILRKEDVLAVLKVLVGLRDGRGEIDDIDNLGNRRVRSVGELLENQYRVGLLRME RAIKERMSSVDIDTVMPHDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHP THYGRICPIETPEGPNIGLINSLATHARVNKYGFIESPYRRVKDGKPLDEVVYMSAMEESKHVIAQSNIKVDAGEIVEDL VPGRINGEPTLLQKETVDLMDVSPRQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLVQSDAPLVGTGMEAVVARDSG AVVIAKRTGVVEQIDGTRIVIRATEETDAARSGVDIYRMSKFQRSNQSTCINQRPLVKVGDKIVAGDIIADGPSTELGEL ALGRNALVAFMPWNGYNFEDSILISERIVRDDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVGEEALRNLDEAGIVAIG AEVQPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGVDKDERALAIERAEID RLGKDRDDEFAILNRNISGRLRELLIGNVALSGPKGLSRGEITADALSQIQPGLWWQIALEDEKAMGELESLRRLFDENR KRLDRRFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRILPIEDMPFLADGTHVDVVLNPLG VPSRMNVGQIFETHLGWACANLGKQITNLMEDWQAGGQKQALIDRLRDIYGPDEELPETEEELIELAKNLGKGVPIATPV FDGARMSDIEDHLEMAGVNKSGQSILYDGLTGEQFKRPVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFG GQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYESIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELENS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 59 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Cseg_0741 | YP_003591866.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 60 |
| Cseg_0741 | YP_003591866.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 59 |
| Cseg_0741 | YP_003591866.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 59 |
| Cseg_0741 | YP_003591866.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 59 |
| Cseg_0741 | YP_003591866.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 59 |
| Cseg_0741 | YP_003591866.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 59 |
| Cseg_0741 | YP_003591866.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 59 |
| Cseg_0741 | YP_003591866.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 59 |
| Cseg_0741 | YP_003591866.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 59 |
| Cseg_0741 | YP_003591866.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 59 |
| Cseg_0741 | YP_003591866.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 59 |
| Cseg_0741 | YP_003591866.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 59 |
| Cseg_0741 | YP_003591866.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 59 |
| Cseg_0741 | YP_003591866.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 59 |
| Cseg_0741 | YP_003591866.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 58 |
| Cseg_0741 | YP_003591866.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 58 |
| Cseg_0741 | YP_003591866.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 57 |
