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Name : rpoB (RIEPE_0405) Accession : YP_003603263.1 Strain : Candidatus Riesia pediculicola USDA Genome accession: NC_014109 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase, beta subunit Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 402228 - 406256 bp Length : 4029 bp Strand : - Note : identified by match to protein family HMM PF00562; match to protein family HMM PF04560; match to protein family HMM PF04561; match to protein family HMM PF04563; match to protein family HMM PF04565; match to protein family HMM TIGR02013 DNA sequence : ATGGGTTTAGATTACAAAAATAAAAGACGTATCAGAAAAAATTTCAGTAAAAGACCTCAAGTTTTGAGTGTTCCTTATCT TCTATCTATTCAGGTGGACTCATTTTCTCAATTCATCAATGGATGTAGAGATAAAAAGAGTGGAATAGAATCTGCTCTTC ATTCAGTTTTTCCTATTAGGAGTTATAATGGATGTGCTGAGCTAAGATATATCAATTATCGTTTAGAAGATCCAATATTT GATGTTAAAGAATGTAGAACAAGAAGTACGACTTATTCTTCTTCCTTAAAAGTAAAATTGAGGTTAGTGGTATACGATAA AGAATCTTCTAAGAAGATACAAAAAATTAAAGATCAAGAAGTATATATGGGAGAAATCCCAATCATGACTGAAAATGGAA CTTTTATCATCAATGGAACTGAGAGGGTTGTCGTTTCTCAATTACATCGAAGTCCAGGTGTGTTTTTTGATAGTGATAAA GGAAAAACGCATTCTTCAGGAAAGATCTTATATAACGCCAGAATAATTCCGTATCGTGGATCTTGGTTGGATTTTGAATT TGATATTAAAGATCATATATTTGTCAGAATTGATAGAAGAAGAAAACTACCAGCGACTGTTATACTTCGTGCGATGGGAT ATAACGAAGAGGAAATGTTGAATTTATTCTTTAAAAAGACAACTTTTAAAAGATACCAAAATAAATTCTTCATGAAGTTG ATTCCTAAAAGATTAAGAGGAGAGACAGCATCCTTTGATATTATCAAAGATGGAAAGAAATATGTTCATAAAGGAAACAG AATCACTACATTGCATATTGAAAATTTAGAAAAAGATAACATTCAAGAAATCGAAGTTCCTTCAGAATATCTCATTGGAA AGATAATAGACAAGGATTATTTCAATCAAAGCGATGGAAAGCTAATTTGTTCAGCAAATACAAAAATATCAAAAGAAATT TTAGAAGATTTAAAAACAACTAATCACGAAACCATTCAAACACTCTTTACAAACGATTTAGATAGAGGTTCTTATATATC TAACACTCTAAGAATCGATTCTACAAAAGATCAATTCGATGCTTTAATAGAAATCTACAGAATGATGAGACCTGGGGAAC CTCCTACGAAAGAATCAGCAGAACATCTATTCAAAAACTTATTTTTTTCAGAAGATCGATATGACCTATCTTCAGTAGGA AGGATGAAGTTCAATCTCTCTTTAAATAAATCACGAGATCAGGGAAATAACGTTCTGGATCAACAAGACATTATCGATGT AATCAGGAAATTGATCGATATCAGAGATGGAAAAGGAGAGGTGGACGATATCGATCATTTGGGAAATAGAAGAATACGTT CAATCGGAGAGATGGCTGAAAATCAATTCAGATTAGGATTGATCCGAGTGGAAAGAGCTGTCAAAGAAAGACTATCTTTA GGAGACTTAGAATCTTTATCTCCACAAGATATGATCAACGCAAAACCAATTTCTGCTGCTGTTAAGGAATTTTTCGGATC TAGTCAACTTTCTCAATTTATGGATCAAAACAATCCATTATCAGAAATCACTCATAAAAGACGGATTTCAGCATTAGGTC CAGGAGGTTTGACTCGAGAAAGAGCAGGATTTGAAGTAAGAGATGTTCACCCAACTCATTATGGAAGGATGTGTCCGATA GAAACTCCAGAAGGACCTAATATAGGATTGATCAACTCACTTTCTGTATATGCTAGAACCAATCAATATGGATTCTTAGA GACTCCGTATAGGGTTGTTCGTAACGGAATAGTGAGCAATGACATTCATTACCTCTCTGCAATCGAAGAAGGAAACCATA TCATTGCTCAAGCAAATACAATATTAAACGAAGACGGATCATTCTATACAGATTTAGTGACTTGTAGAAATAAAGGAGAA TCTAATTTATTCAATAAAAAACAAGTAGAATATATGGATGTTTCCACACAACAAATTGTATCTGTTGGTGCGTCCTTGAT TCCTTTTCTTGAACATGATGATGCTAACCGTGCACTCATGGGTGCAAATATGCAAAGACAAGCTGTTCCTACATTAAGAT CGGAAAAACCTTTGGTTGGAACAGGAATGGAACGAGTAGTCGCAATAGATTCCGGAGTAACGATTATTGCTAAAAGATCT GGAAAAGTACAGTACGTAGATTCTTCTAAGATAGTAATAAAAACTGACCATCATGATCTTCTCTCAAATGATTTTGGAAT TGATATATATGACTTGATAAAATATTCTAGATCCAACCAAAATACCTGTATCAATCAAGTACCTTGTGTTTCTTTAGGAG ATAAAGTCAAATCAGGAGAAATTTTAGCAGATGGTCCATCTACAGATCTGGGAGAGCTCGCATTAGGACAAAACATGAGA GTCGCATTTATGCCATGGAATGGTTATAACTTCGAAGACTCTATCTTAATATCAGAAAGAATCGTTCAGAAAGATCGGTT TACAACCATCCATATACAAGAATTATCTTGCATCTCTAGGGACACTAAATTAGGTCCAGAAGAAATTACAGCTGATATTC CGAATGTTGGAGTTTCAGCTCTATCTAAGTTAGACGAGTCAGGAATCGTTTATATAGGAGCAGAGGTAATTGGAGGTGAA ATATTAGTTGGGAAGGTGACTCCAAAAGGAGAAACTCAATTAACTCCTGAAGAAAAACTTCTAAGAGCCATATTTGGCGA AAAAGCATCTGATGTGAAAGATTCCTCTTTGAGGGTTCCAAACGGAACTTGTGGAACCGTAATTGATGTTCAAATCTTTA CAAGAGATGGAGTGAAAAAAGACAAAAGAACTCTAGAAATAGAAAAGATTCGAACGAAAGAGATGGAAAAAGATCTTCAT GAAGAACTCGAAATACTTGAGTCTTGTCTATTCTGTGAAGTTCGCGATTTTCTAATTAGAAATGGAATGGAAAAATCAGA AATTGATAGTTTAGAAGGAAGAAAATTATTTCAAATTGACTTAAAGAATGATCAAGCCAAAAAAACATTGAACCAATTTC AAAGAAGATATTACGAATTACAAAAGACATTTAAAGAGAAATTGAACAAAAAAAGTCATCAAATCACTCAAGGAGACGAT TTATCACCAGGTGTTTTAAAAATTGTCAAAGTGCATTTAGCTGTAAAACGACAGATACAACCAGGAGATAAGATGGCTGG TCGTCATGGAAACAAGGGAGTGATATCGAAAATCAATCCGATAGAAGACATGCCATACGATCAAGAAGGAAATCCAGTGG ATATCGTTCTCAACCCTCTCGGAGTACCTTCTAGAATGAACATCGGACAGATCTTAGAGACACATTTGGGGATGGCAGCT AAGGGAGTTGGGAATCAAATTGATCGGATGATTCGTAGAAAAGAGAAAATAGAGAAACTCAGAAAATTCATTCAAAAAGC TTATGATATTGGAATTGGAACTTATCAAAGAGTGAATCTTGATGAATTTTCTGATAAGGAAGTATTAGAACTAGCGAACA ATCTAAAAAATGGGTTACCAATGTCAACTCCAGTTTTTGATGGAGCTAAAGAAGATGAGATCAAAAAAATGCTGAATTTG GCAGGTCTTCCAACCTCTGGACAAATTGTTCTATTTGATGGATGTACTGGAGAAAAATTTGAAAGATTAGTGACAGTTGG ATATATGTATATGTTGAAATTAAATCATTTAGTCGACGATAAAATGCATGCTAGATCGACAGGTTCTTATAGCTTAGTAA CTCAACAACCTTTAGGTGGAAAAGCACAATTTGGAGGACAGAGATTCGGAGAAATGGAAGTTTGGGCTCTGGAAGCATAT GGAGCTTCTCATACGTTGCAAGAAATGTTAACTGTCAAATCTGACGATGTAAATGGAAGAACAAAGATGTACAAGAACAT TGTCAGCGGAGAACATAAAATGGAACCTGGAATGCCAGATTCTTTCAATGTTTTGTTGAAAGAGATCAGATCTCTAGGGA TCAATATTGAATTGGAAAGGAAGCGATAG Protein sequence : MGLDYKNKRRIRKNFSKRPQVLSVPYLLSIQVDSFSQFINGCRDKKSGIESALHSVFPIRSYNGCAELRYINYRLEDPIF DVKECRTRSTTYSSSLKVKLRLVVYDKESSKKIQKIKDQEVYMGEIPIMTENGTFIINGTERVVVSQLHRSPGVFFDSDK GKTHSSGKILYNARIIPYRGSWLDFEFDIKDHIFVRIDRRRKLPATVILRAMGYNEEEMLNLFFKKTTFKRYQNKFFMKL IPKRLRGETASFDIIKDGKKYVHKGNRITTLHIENLEKDNIQEIEVPSEYLIGKIIDKDYFNQSDGKLICSANTKISKEI LEDLKTTNHETIQTLFTNDLDRGSYISNTLRIDSTKDQFDALIEIYRMMRPGEPPTKESAEHLFKNLFFSEDRYDLSSVG RMKFNLSLNKSRDQGNNVLDQQDIIDVIRKLIDIRDGKGEVDDIDHLGNRRIRSIGEMAENQFRLGLIRVERAVKERLSL GDLESLSPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRMCPI ETPEGPNIGLINSLSVYARTNQYGFLETPYRVVRNGIVSNDIHYLSAIEEGNHIIAQANTILNEDGSFYTDLVTCRNKGE SNLFNKKQVEYMDVSTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGMERVVAIDSGVTIIAKRS GKVQYVDSSKIVIKTDHHDLLSNDFGIDIYDLIKYSRSNQNTCINQVPCVSLGDKVKSGEILADGPSTDLGELALGQNMR VAFMPWNGYNFEDSILISERIVQKDRFTTIHIQELSCISRDTKLGPEEITADIPNVGVSALSKLDESGIVYIGAEVIGGE ILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTCGTVIDVQIFTRDGVKKDKRTLEIEKIRTKEMEKDLH EELEILESCLFCEVRDFLIRNGMEKSEIDSLEGRKLFQIDLKNDQAKKTLNQFQRRYYELQKTFKEKLNKKSHQITQGDD LSPGVLKIVKVHLAVKRQIQPGDKMAGRHGNKGVISKINPIEDMPYDQEGNPVDIVLNPLGVPSRMNIGQILETHLGMAA KGVGNQIDRMIRRKEKIEKLRKFIQKAYDIGIGTYQRVNLDEFSDKEVLELANNLKNGLPMSTPVFDGAKEDEIKKMLNL AGLPTSGQIVLFDGCTGEKFERLVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY GASHTLQEMLTVKSDDVNGRTKMYKNIVSGEHKMEPGMPDSFNVLLKEIRSLGINIELERKR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 64 |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 64 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_003603263.1 | DNA-directed RNA polymerase, beta subunit | CP004022.1.gene2794. | Protein | 0.0 | 76 |
| rpoB | YP_003603263.1 | DNA-directed RNA polymerase, beta subunit | NC_002695.1.914942.p | Protein | 0.0 | 75 |
| rpoB | YP_003603263.1 | DNA-directed RNA polymerase, beta subunit | CP001138.1.gene4362. | Protein | 0.0 | 75 |
| rpoB | YP_003603263.1 | DNA-directed RNA polymerase, beta subunit | CP001918.1.gene250.p | Protein | 0.0 | 75 |
| rpoB | YP_003603263.1 | DNA-directed RNA polymerase, beta subunit | CP000034.1.gene3741. | Protein | 0.0 | 75 |
| rpoB | YP_003603263.1 | DNA-directed RNA polymerase, beta subunit | CP000647.1.gene4402. | Protein | 0.0 | 75 |
| rpoB | YP_003603263.1 | DNA-directed RNA polymerase, beta subunit | NC_002516.2.881699.p | Protein | 0.0 | 66 |
| rpoB | YP_003603263.1 | DNA-directed RNA polymerase, beta subunit | NC_009085.4918494.p0 | Protein | 0.0 | 64 |
| rpoB | YP_003603263.1 | DNA-directed RNA polymerase, beta subunit | NC_011586.7046027.p0 | Protein | 0.0 | 64 |
| rpoB | YP_003603263.1 | DNA-directed RNA polymerase, beta subunit | NC_010400.5987325.p0 | Protein | 0.0 | 64 |
| rpoB | YP_003603263.1 | DNA-directed RNA polymerase, beta subunit | NC_010611.6233925.p0 | Protein | 0.0 | 64 |
| rpoB | YP_003603263.1 | DNA-directed RNA polymerase, beta subunit | NC_011595.7060572.p0 | Protein | 0.0 | 64 |
| rpoB | YP_003603263.1 | DNA-directed RNA polymerase, beta subunit | NC_010410.6003841.p0 | Protein | 0.0 | 64 |
| rpoB | YP_003603263.1 | DNA-directed RNA polymerase, beta subunit | CP000675.2.gene392.p | Protein | 0.0 | 64 |
| rpoB | YP_003603263.1 | DNA-directed RNA polymerase, beta subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 60 |
| rpoB | YP_003603263.1 | DNA-directed RNA polymerase, beta subunit | NC_008702.1.4609796. | Protein | 0.0 | 60 |
| rpoB | YP_003603263.1 | DNA-directed RNA polymerase, beta subunit | NC_011035.1.6448762. | Protein | 0.0 | 59 |
| rpoB | YP_003603263.1 | DNA-directed RNA polymerase, beta subunit | NC_012469.1.7686402. | Protein | 0.0 | 45 |
