Gene Information

Name : BC1002_5444 (BC1002_5444)
Accession : YP_003608883.1
Strain :
Genome accession: NC_014118
Putative virulence/resistance : Virulence
Product : type VI secretion protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3516
EC number : -
Position : 2453895 - 2454431 bp
Length : 537 bp
Strand : +
Note : KEGG: bph:Bphy_5978 type VI secretion protein; TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein

DNA sequence :

ATGTCGAACAGTTTGCAGAAATGGGTGGGGCGTAACCGTCCGCCGCGTGTCCAGATCACCTACGACGTCGAAGTCGGCGA
TGCGGTCGAGAAGCGTGAGCTTCCGCTCGTGGTCGGCCTGCTGGCGGACCTTTCGGGGCATCCGGCCACGCCGCTGCCCA
AGCTCAAGGAGCGCCGTCTGGTCGATATCGACCGTGACAACTTCGACGAGATCATGGGCAAAATCCGCCCGCGACTCGAC
CTTTCCGTGCCGGACACGATGAAGGGCGAAGGCAATATCAAGGTCGAGTTGAAGTTCGAAAAGTTCGAGGACTTCCACCC
GGAAAGCATCGTGAATCAGGTGCCGCGCCTTGCGAAGCTGCTCGAAGCGCGTCAGCAACTGCGTGATCTGCTCGCCAAAC
TCGACGGCAACGACGAACTCGATTCGATGCTCGAGCGCATCGTGCAGAGCAGCGAAGAACTCAAGAAAGTTCAAAGCCAG
GCTCAAGCCAGCAACGCACCCGCGGCCGAGGCTGCAGGTGACGCACCGGCTGAATAA

Protein sequence :

MSNSLQKWVGRNRPPRVQITYDVEVGDAVEKRELPLVVGLLADLSGHPATPLPKLKERRLVDIDRDNFDEIMGKIRPRLD
LSVPDTMKGEGNIKVELKFEKFEDFHPESIVNQVPRLAKLLEARQQLRDLLAKLDGNDELDSMLERIVQSSEELKKVQSQ
AQASNAPAAEAAGDAPAE

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
STY0297	NP_454879.1	conserved hypothetical protein	Not tested	SPI-6	Protein	3e-30	44

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
BC1002_5444	YP_003608883.1	type VI secretion protein	VFG2069	Protein	9e-31	42