Gene Information

Name : csoS1b (THI_0143)
Accession : YP_003622766.1
Strain : Thiomonas sp. 3As
Genome accession: NC_014145
Putative virulence/resistance : Virulence
Product : Major carboxysome shell protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 145647 - 145943 bp
Length : 297 bp
Strand : +
Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 7934888; Product type s : structure

DNA sequence : 
ATGGCGAACGTGAATGGAATTGCCCTGGGTATGATCGAAACGCGCGGACTGGTGCCGGCGATCGAAGCGGCTGATGCCAT
GTGCAAGGCAGCGGAAGTGCGACTGATCGGTCGCCAGTTCGTGGGCGGCGGCTACGTCACCGTGCTGGTGCGCGGCGAAA
CCGGCGCGGTCAACGCGGCGGTGCGCGCGGGTGCCGATGCCTGCGAGCGCGTGGGTGACGGCCTGGTGGCTGCGCACATC
ATCGCCCGCGTGCACAGCGAAGTCGAAGGTATTCTGCCTTCCACGCCGAGCGCCTGA

Protein sequence : 
MANVNGIALGMIETRGLVPAIEAADAMCKAAEVRLIGRQFVGGGYVTVLVRGETGAVNAAVRAGADACERVGDGLVAAHI
IARVHSEVEGILPSTPSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 5e-12 59
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 5e-12 54
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 3e-11 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
csoS1b YP_003622766.1 Major carboxysome shell protein VFG1596 Protein 2e-12 59
csoS1b YP_003622766.1 Major carboxysome shell protein VFG1597 Protein 2e-12 54
csoS1b YP_003622766.1 Major carboxysome shell protein VFG1598 Protein 1e-11 50