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Name : rpoB (THI_3719) Accession : YP_003626063.1 Strain : Thiomonas sp. 3As Genome accession: NC_014145 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 3620459 - 3624562 bp Length : 4104 bp Strand : - Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 2068078, 377281, 626682, 91071589, 92316970, 93094280, 9893021, 99255760; Product type e : enzyme DNA sequence : ATGTCCTACTCGTTCACTGAGAAAAAGCGCATTCGGAAAAGTTTTGGCAGCCGCCAAAGTGTTCTGGATGTCCCCTATCT GCTGGCTACGCAGATCAACTCCTACGAGGCCTTTTTGCAAAAAGACCTTCCCTTGCCGCAGCGCAAGGACGAAGGGCTGG AAGCGGCGTTCCGCGCCATTTTCCCCATCGTGTCGCACAACCAGTATGTGCGCATGGAATACAACGGCTACACCCTGGCA CGCCCGGTGTTCGACGTGCGCGAATGTCAGCAGCGCGGTCTGACCTTTGCGTCGGCACTGCGGGCCAAAGTGCGCCTGAT CGTGATGGACCGCGAAGCGGCCAAGCCCACGGTCAAGGAGGTGAAGGAGCAGGAGGTCTATATGGGCGAGATTCCGCTCA TGACCGACAAGGGCTCGTTCATCATCAACGGTACCGAGCGGGTGATCGTCAGCCAGCTGCACCGCTCGCCCGGCGTGTTT TTCGAGCACGACAAGGGCAAGACCCACAGCTCGGGCAAGCTGCTGTTTTCCGCCCGCATCATTCCCTACCGTGGCTCCTG GCTCGACTTCGAATTCGACGCCAAGGACATTCTGTATTTCCGCGTCGACCGCCGCCGCAAGATGCCGGTCACCATTCTGC TCAAGGCCCTGGGCCTGAATCCCGAGCAGATCCTGGCGCACTTCTTTGCCTTCGACCACATGCAGTTGATGGACGATGGC GCTTTGCTCGAATTCGTGCCCGACCATTTCAAGGGCGAAGTGGCCCGCTTCGACCTGATCGACCAGAATGGCAAAGTGGT TGTCGCCAAGGACAAGCGCATCAACACCCGCCATCTGCGCGAGCTGGAGCAGGGCGGCACGCAACGCCTGTCGGTGCCGG AAGACTTCCTGTTGGGCAAAGTGCTGGCGCGCAACCTGGTGTCACAAGACACCGGCGAGATCGTGGCCCGCGCCAATGAG GAGCTCACCGAGGCGCTGCTGAAGAAAATCCGCGAAGCCGGCATTCAGCAGATCCAGACCCTCTACATCAACGACCTCGA CCAGGGCGCGTTCATTTCGCAAACCCTGCGCATCGATGAAGTGGCCGACCAGCTCGGGGCCAAGGTGGCGATCTACCGCA TGATGCGCCCCGGCGAGCCGCCGACCGAAGACGCCGTCGAGGCTTTGTTCAACCGCCTGTTCTTCGACGCTGACGCCTAC GACTTGTCGCGCGTGGGCCGCATGAAGTTCAACCGCCGCCTCGGTCGCGAAGAGATCGAAGGCGAGATGGTGCTGTCGCA TGAAGACATCATGGCGGTTATCAAGCTGCTGGTCGAGTTGCGCAACGGCCGCGGCGAAGTCGATGACATCGACCACCTCG GCAACCGCCGCGTGCGCTGCGTGGGCGAGCTGGCCGAGAACCAGTTCCGTGCCGGGCTGTCTCGCATCGAGCGCGCGGTG AAGGAGCGTCTGGGCCAGGCCGAGACCGAAAACCTGATGCCGCACGACTTCATCAACTCCAAGCCCATCTCGGCGGCGAT CAAGGAATTCTTCGGCTCCTCGCAACTCTCGCAGTTCATGGACCAGACCAACCCGCTGTCGGAGATCACCCACAAGCGCC GCGTCTCGGCCCTGGGCCCGGGCGGTCTGACGCGCGAGCGCGCTGGTTTTGAAGTGCGCGACGTGCATCCCACGCACTAC GGTCGCGTCTGCCCGATCGAAACGCCGGAAGGCCCGAACATCGGTCTGATCAACTCGCTGGCGCTGTTCGCCCGGTTGAA CGAATACGGCTTCATCGAGACGCCTTATCGCCGCGTGATCGACCGTAAGGTGACTGACCAGATCGACTACCTCTCGGCCA TCGAAGAAGGCAAGTACGTCATCGCCCAGGCCAATGCCGGCATGGACGAGCACGGCATGCTCAACGACGAGTTGGTGTCT GCCCGCGAAGCTGGCGAGTCCATCATGGTCTCGCCAGAGCGGGTGCAGTACATGGACGTGTCGCCCAGCCAGATCGTGTC GGCCGCGGCCTCGCTCGTGCCCTTCCTGGAGCACGACGACGCCAACCGCGCGCTGATGGGCGCCAACATGCAGCGTCAGG CCGTGCCCGTGCTGCGTCCTGAAAAGCCCCTGGTCGGCACCGGGGTCGAGCGCGTGACCGCGGTCGACTCGGGCACCGTG GTCACCGCCTTGCGCGGCGGGGTGGTGGACTATGTGGACAGCGCACGCATCGTGGTGCGCGTCAATGACGACGAAACCCA GGCGGGCGAAGTCGGCGTGGACATCTACAACCTCATCAAATACCAGCGTTCCAACCAGAACACCAACATCCACCAGCGCC CGCTGGTCAAGCGCGGCGACATACTCGCCAAGGGCGATGTCGTGGCCGACGGCGCTTCGACCGACCTCGGCGAACTGGCG CTGGGCCAGAACATGCTGGTGGCCTTCATGCCGTGGAACGGCTACAACTACGAAGACTCGATCCTGCTGTCCGAGCGCGT GGTGGCCGAAGATCGCTTCACCTCCATCCACATCGAAGAGCTGAACGTCCCGGCGCGCGACACCAAGCTGGGCTCCGAAG AAATCACCCGCGACATTCCCAATCTGTCCGAGCACCAATTGGCGCGTCTGGACGAGTCGGGCATCATTTACGTGGGCGCG GAAGTGGAAGCGGGCGACGTGCTTGTGGGCAAGGTCACCCCCAAGGGCGAGACCCAGCTCACCCCGGAAGAGAAGCTGCT GCGCGCCATCTTCGGCGAAAAGGCGTCCGACGTGAAGGACACCTCGCTGCGCGTGCCCTCGGGCATGTACGGCACCGTCA TTGACGTGCAGGTGTTCACCCGCGAAGGCATCCCGCGTGACAAGCGCGCCCAGCAGATCATCGACGACGAGCTCAAGCGC TATCGCCTCGACCTCAACGACCAGATGCGCATCGTCGAGGCCGATACCTTCGACCGTCTGGGCAAGCTGCTCACTGGCAA GACCGCCAACGGCGGCCCGAACAAGCTGGCCAAGGGCGCAACCATCACCGCCGATTACCTGGGCGAGACCGACCGCTATA ACTGGTTCGACATCCGCCCGGCGGATGAAGCGCTGGCGCAGCAGATGGAACAGCTCAAGGACTCGCTGGAGAAGCGCCGC CACGCCTTCGATCTGATGTTCGAAGAGAAGCGCCGCAAGCTCACCCAGGGCGATGAGCTGCCCACCGGCGTGCTCAAGAT GGTCAAGGTTTACCTGGCCGTCAAGCGCCGCCTGCAGCCAGGCGACAAGATGGCCGGCCGTCACGGCAACAAGGGTGTGG TGTCCAAGATCGTTCCGGTCGAAGACATGCCGCACATGCCTGATGGCACCACGGTGGACATCGTGCTCAACCCGCTGGGC GTGCCGTCGCGCATGAACATCGGGCAGATTCTCGAAACCCACCTGGGCTGGGCCTCGATCGGCATCGGCAAACGGGTCAA CGACATGCTGCAGTCGCATGCCAAGGCGGCCGAGTTGCGCAAATTCCTGGGCACTCTTTACAACTTCAGCGGCAAGCAGG AAGCGCTCGATCAGCTCAGCGACGCCGAGGTGCTTGAACTCGCCAGCAACCTCAAGGCCGGTCTGCCCATCGCCAGCCCG GTGTTCGACGGCGCCAGCGAAGCCGAAATCGGCCAGATGCTCGACCTGGCCTATCCCGACGACATCGCCGAGAAGCTGCA GCTCACCGCGGCGAAAAAGCAGGTCATGCTGACCGATGGCCGCACTGGCGAAGTCTTCGAGCGCCCGGTGACCGTGGGCA TCATGCACGTGCTCAAGCTGCATCACCTGGTTGACGACAAGATGCACGCCCGCTCCACCGGCCCGTACTCGCTGGTCACG CAGCAGCCGCTGGGCGGCAAGGCGCAGTTCGGCGGTCAGCGTTTCGGCGAGATGGAAGTCTGGGCGCTCGAAGCCTACGG CGCCTCGTATGTGCTGCAGGAAATGCTCACCGTCAAGTCCGACGATACGCAGGGCCGCACCAAGATGTACGAGAGCATCG TCAAGGGCGACCACATCATCGAAGCCGGGATGCCCGAGTCGTTCAACGTGCTGATCAAGGAAATCCGTTCCCTGGGTCTG GACATCGAACTCGAACGCAATTGA Protein sequence : MSYSFTEKKRIRKSFGSRQSVLDVPYLLATQINSYEAFLQKDLPLPQRKDEGLEAAFRAIFPIVSHNQYVRMEYNGYTLA RPVFDVRECQQRGLTFASALRAKVRLIVMDREAAKPTVKEVKEQEVYMGEIPLMTDKGSFIINGTERVIVSQLHRSPGVF FEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDAKDILYFRVDRRRKMPVTILLKALGLNPEQILAHFFAFDHMQLMDDG ALLEFVPDHFKGEVARFDLIDQNGKVVVAKDKRINTRHLRELEQGGTQRLSVPEDFLLGKVLARNLVSQDTGEIVARANE ELTEALLKKIREAGIQQIQTLYINDLDQGAFISQTLRIDEVADQLGAKVAIYRMMRPGEPPTEDAVEALFNRLFFDADAY DLSRVGRMKFNRRLGREEIEGEMVLSHEDIMAVIKLLVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLSRIERAV KERLGQAETENLMPHDFINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHY GRVCPIETPEGPNIGLINSLALFARLNEYGFIETPYRRVIDRKVTDQIDYLSAIEEGKYVIAQANAGMDEHGMLNDELVS AREAGESIMVSPERVQYMDVSPSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKPLVGTGVERVTAVDSGTV VTALRGGVVDYVDSARIVVRVNDDETQAGEVGVDIYNLIKYQRSNQNTNIHQRPLVKRGDILAKGDVVADGASTDLGELA LGQNMLVAFMPWNGYNYEDSILLSERVVAEDRFTSIHIEELNVPARDTKLGSEEITRDIPNLSEHQLARLDESGIIYVGA EVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMYGTVIDVQVFTREGIPRDKRAQQIIDDELKR YRLDLNDQMRIVEADTFDRLGKLLTGKTANGGPNKLAKGATITADYLGETDRYNWFDIRPADEALAQQMEQLKDSLEKRR HAFDLMFEEKRRKLTQGDELPTGVLKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSKIVPVEDMPHMPDGTTVDIVLNPLG VPSRMNIGQILETHLGWASIGIGKRVNDMLQSHAKAAELRKFLGTLYNFSGKQEALDQLSDAEVLELASNLKAGLPIASP VFDGASEAEIGQMLDLAYPDDIAEKLQLTAAKKQVMLTDGRTGEVFERPVTVGIMHVLKLHHLVDDKMHARSTGPYSLVT QQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSDDTQGRTKMYESIVKGDHIIEAGMPESFNVLIKEIRSLGL DIELERN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 64 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 64 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_003626063.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | CP002695.1.gene18.p0 | Protein | 0.0 | 77 |
| rpoB | YP_003626063.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | NC_008702.1.4609796. | Protein | 0.0 | 74 |
| rpoB | YP_003626063.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | NC_011035.1.6448762. | Protein | 0.0 | 72 |
| rpoB | YP_003626063.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | NC_002516.2.881699.p | Protein | 0.0 | 68 |
| rpoB | YP_003626063.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | CP000034.1.gene3741. | Protein | 0.0 | 65 |
| rpoB | YP_003626063.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | NC_002695.1.914942.p | Protein | 0.0 | 65 |
| rpoB | YP_003626063.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | CP000647.1.gene4402. | Protein | 0.0 | 65 |
| rpoB | YP_003626063.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | CP000675.2.gene392.p | Protein | 0.0 | 65 |
| rpoB | YP_003626063.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | CP004022.1.gene2794. | Protein | 0.0 | 64 |
| rpoB | YP_003626063.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | CP001918.1.gene250.p | Protein | 0.0 | 64 |
| rpoB | YP_003626063.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | CP001138.1.gene4362. | Protein | 0.0 | 64 |
| rpoB | YP_003626063.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | NC_009085.4918494.p0 | Protein | 0.0 | 64 |
| rpoB | YP_003626063.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | NC_010400.5987325.p0 | Protein | 0.0 | 64 |
| rpoB | YP_003626063.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | NC_010410.6003841.p0 | Protein | 0.0 | 64 |
| rpoB | YP_003626063.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | NC_011586.7046027.p0 | Protein | 0.0 | 64 |
| rpoB | YP_003626063.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | NC_010611.6233925.p0 | Protein | 0.0 | 64 |
| rpoB | YP_003626063.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | NC_011595.7060572.p0 | Protein | 0.0 | 64 |
| rpoB | YP_003626063.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | AM180355.1.gene120.p | Protein | 0.0 | 47 |
