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Name : Plim_0443 (Plim_0443) Accession : YP_003628492.1 Strain : Planctomyces limnophilus DSM 3776 Genome accession: NC_014148 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 551257 - 554973 bp Length : 3717 bp Strand : + Note : TIGRFAM: DNA-directed RNA polymerase, subunit beta; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; KEGG: mes:Meso_1819 DNA-directed RNA polymerase DNA sequence : ATGCCCAACCCCGCCCAGCGTGTGATTGAGACTCATGAAACTCGCCATTTTGGATCCATTCGTGGTGAGTTTGCCATCTC TGAACTCACACAAATCCAGACAGCTTCTTACCATCGCTTTCTGCAACTTGAGAGTGAGCCACGTGAGCGAGCTGATGACG GTCTGGAGGCGATTCTTCGGGAAGTCTTCCCCATCGAGAGCTACGATCAGAAGTATCGCCTGGAGTACATCAAGTACGAA CTCGGTAAGCCTCGCTATACACCACTCGAGTGCCGCCAGCTTCGCTTAACCTACGGACGTCCTTTCCGGGTCTGGCTGCG GCTCATGAAGGAGCAGCCGCAGGAAGAAGAAGTTTATCTGGGTGATTTGCCCATCATGATCGGTGGTGGCGAATTCATCA TCAACGGTTCCGAGCGAGTTGTTGTCAGTCAGTTGCACCGCTCTCCCGGTGTTGACTTTGTGATGTCAGCCGAACCCGGT GAAAAGAAGACTTTCTCCTGCCGTGTCATTCCCGAGCGTGGTAGCTGGATCGAGCTGAATATCGGCAAGCGGGATACTCT GAATGTCCGCATCGATCAGTCAGGCAAGTTCAGTGCGATGACCTTCCTGCGGGCGATGGATCCTGCGTATGGTCGTACGA AAGATCTGGTCAAGCTGTTCCACAATGTGGTGACATTCAAGGTCAGCGACAGCCACTTCGTGGAGCACGTCGCTGGCAAG CACGCTGCGGACGATATCGTTTATCCAGCCGGTCACGAGCGGATGGGCGAGATCATCTGCGAAGCCTGTCATGTCATCAC GAAGCCACTGGCTGAAGAGATTAAGGAATCGGGGATCAAGACAGTCGATGTCGCCGAGAAGTCGGATGATCCCATCATTA TGGATAGTCTGATTGAGGATTCGACCGCGAGCCATGAAGACGCGCTGCTTCGAATCTATCAGCGTCTGCGTCCAGGCAAT CCACCTCAGCTGGAAAAGGCCATCGAACTCTTCAAAGAGAAGTTCTTTGACGTGAATCGATATCGAATTGGTCGCGTCGG TCGTTTCCGCGTGAACCGTAAATTTGATCAGGATGTGCCTGATACCGAGATGACTCTTCGTCCCGAAGATATCATCAACT CCATCCGGTATGTGATGAAGTTGCGGACGGGTGATGCGACAGCCCATGTCGATGATATCGATAACCTGGGCAATCGGCGC CTGAGAACCATTGACGAACTCGCACAGGAAGAACTTCGCAAAGGCTTCCTGAAGCTCCGCCGCACCGTTCAGGAGCGAAT GAGCCTCAAAGATGTGGAGGAAATGTCACCACGCTCTTTGATCAACCCGAAGAGTGTCTCGGCAGCGATTGATTTCTTCT TCGGCCGTGGCGAACTCTCACAGGTGGTGGATCAGACCAATCCTCTGGCCACGTTGACTCACGAGCGCCGGCTCAGTGCC CTTGGCCCGGGCGGCTTGAACCGCAAGCGGGCAGGCTTTGAAGTTCGCGACGTACATATTTCGCACTATGGCCGTATCTG CCCGATTGAAACACCGGAAGGTACCAACATCGGTCTGATTTCAAGCCTCAGCATTTTTGCGAAGGTCGATGATTACGGTT TCCTTATCACCCCATATCGCAAGGTTGTCGATAAGAAGGTGACTGAAGAAATCGTCTGGCTGCGAGCCGACGAAGAGTCG CATGTTTACATCGCCCCGGCTGATACGCCGGTGCAGGACGACAAGATGCGTGATGAACGCGTCATGTGTCGTCACCACAA CGACTTCCTCTGGCTGCCCGCTTCTCAGGTGAACTACATCGACGTCGCACCTTGCCAGATGGTGGGTGTCTCGGCCGGTT TGATTCCGTTCCTTGAGCACGACGATGCCAACCGCGCACTGATGGGTTCAAACATGCAGCGGCAGGGCGTTCCTCTGCTG ATTGCGGAACCACCTCTGGTAGGAACTGGTCTTGAAGGACCGGTTGCCCAGAACAGCGGGATGGTTTTGAGAGCCGAGAA GTCAGGTAAAGTGACTTACGTCGATGGGGATTGCATCGAAATCGATGGCAAACGCACACCACTTCGCAAGTACACAGGCC TCAATGAGCGCACCTGTCTGAACCAGACTCCTGTCGTCAAGGTGGGTGATAAGGTCAAGAAGGGTGATATCCTTGTTGAC AGTGCTGCTGTGGGTGATGGTGAGTTGGCACTGGGACGAAACGTGCTCGTCGCGTTCATGTCCTGGGAAGGCTTCAACTT TGAAGACGCGATCATCCTTTCGGAACGTCTCGTGAAAGAAGACGTTTACACGTCAATCCACATCGATGAATTCGATGTGG AAGTTCGCGAAACCAAACTGGGTCGCGAAGAATTCACTCGCGACATTCCCAACGTGAGCGATAAGGCTCTGCGTCATCTG GATGATGACGGTGTGATCCATGTCGGTACACGCGTTGAGCCAGGCGATATTCTGGTAGGTAAGGTTTCGCCCAAAGCCAA GACCGAACTGACACCGGAAGAAAAGCTCCTTCACGCGATCTTCGGACGGGCCGGGGAAGACGTGAAGAACGAATCACTGG AAGTCCCCAGTGGTGTGGAAGGGATCGTCATTCATACAGAGAAGTTCTCTCGTCGAATGAGTCTCTCGGAAACCGAACGT AAGAAGTTCGAAACTGACCTGAAGCGTGTGGAAGAGTCTGGAAATGATTTGATTGCAGCTGCTTTCAAGACCTTCCTCAC TCATTTTGAAACAGCTCTGGAAAAGAAACTGCAGGATGACGATGGACGTGATCTTGGCAAGCTCGATGATGCCAAGTTCC TGGCCACTTATGCGGAGTCATTCCTGCATCGTTTTGAAACCATGGATCTCCGCAGTCCTCAGAAGAAGGCCGACTGCAAG AAGGCCATCAAGGAATTCTGGGGCCCGGTGGAAGAAGCGATTGATGATCGTGACCGTAAGCTGAACACCATGAAGCGTGG CGATGAGTTGCCCAGCGGTGTGCTGCAGATGGTGAAGGTCTATGTCGCTCAGAAGCGGCAGATCTCTGTCGGTGACAAGA TGGCCGGTCGTCACGGCAACAAGGGGGTGATTTCCAAGGTGCTGCCAGTCGAGGATATGCCATTCCTCGCCGATGGAACA CCGGTTGACATCATTCTCAACCCACTGGGTGTGCCCAGCCGTATGAACGTGGGGCAGATTCTCGAAACTCATCTGGGCTG GGCTGCAGCCAAGCTGGGCTTCCGAGCGAAATGCCCTGTCTTTGATGGACCGGCTGAAGAAACGATTCGCGAACTGCTGA AGCAGGCTGGTCTTCCCGAAGACGGAAAGGCACAGTTGCTGGATGGCCGCACCGGCGAACCGTTCGAGCAGAAGACGACT GTGGGCTACATCTACATGCTCAAGCTGCATCACCTGGTCGAAGATAAAGTTCATGCCCGCGCCACTGGCCCTTACTCTTT GATTACTCAGCAGCCGCTGGGTGGTAAGGCTCGTTTTGGTGGTCAGCGATTTGGTGAGATGGAAGTGTGGGCTCTGGAAG CCTACGGTGCTGCCTATATTCTGCAGGAATTGCTCACTGTGAAGAGCGACGATGTGGAAGGCCGCACGAAGATCTACGAA TCGATGGTCAAGGGAGAAAACACTCTCGAAGCCGGTACACCTGCCAGCTTTGAAGTGCTCAACAACGAAATTCGTGGTCT CTGCCTGAACATGCAGTTGGAGAAGAGCCTCACATAG Protein sequence : MPNPAQRVIETHETRHFGSIRGEFAISELTQIQTASYHRFLQLESEPRERADDGLEAILREVFPIESYDQKYRLEYIKYE LGKPRYTPLECRQLRLTYGRPFRVWLRLMKEQPQEEEVYLGDLPIMIGGGEFIINGSERVVVSQLHRSPGVDFVMSAEPG EKKTFSCRVIPERGSWIELNIGKRDTLNVRIDQSGKFSAMTFLRAMDPAYGRTKDLVKLFHNVVTFKVSDSHFVEHVAGK HAADDIVYPAGHERMGEIICEACHVITKPLAEEIKESGIKTVDVAEKSDDPIIMDSLIEDSTASHEDALLRIYQRLRPGN PPQLEKAIELFKEKFFDVNRYRIGRVGRFRVNRKFDQDVPDTEMTLRPEDIINSIRYVMKLRTGDATAHVDDIDNLGNRR LRTIDELAQEELRKGFLKLRRTVQERMSLKDVEEMSPRSLINPKSVSAAIDFFFGRGELSQVVDQTNPLATLTHERRLSA LGPGGLNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLSIFAKVDDYGFLITPYRKVVDKKVTEEIVWLRADEES HVYIAPADTPVQDDKMRDERVMCRHHNDFLWLPASQVNYIDVAPCQMVGVSAGLIPFLEHDDANRALMGSNMQRQGVPLL IAEPPLVGTGLEGPVAQNSGMVLRAEKSGKVTYVDGDCIEIDGKRTPLRKYTGLNERTCLNQTPVVKVGDKVKKGDILVD SAAVGDGELALGRNVLVAFMSWEGFNFEDAIILSERLVKEDVYTSIHIDEFDVEVRETKLGREEFTRDIPNVSDKALRHL DDDGVIHVGTRVEPGDILVGKVSPKAKTELTPEEKLLHAIFGRAGEDVKNESLEVPSGVEGIVIHTEKFSRRMSLSETER KKFETDLKRVEESGNDLIAAAFKTFLTHFETALEKKLQDDDGRDLGKLDDAKFLATYAESFLHRFETMDLRSPQKKADCK KAIKEFWGPVEEAIDDRDRKLNTMKRGDELPSGVLQMVKVYVAQKRQISVGDKMAGRHGNKGVISKVLPVEDMPFLADGT PVDIILNPLGVPSRMNVGQILETHLGWAAAKLGFRAKCPVFDGPAEETIRELLKQAGLPEDGKAQLLDGRTGEPFEQKTT VGYIYMLKLHHLVEDKVHARATGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVKSDDVEGRTKIYE SMVKGENTLEAGTPASFEVLNNEIRGLCLNMQLEKSLT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 44 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Plim_0443 | YP_003628492.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 45 |
| Plim_0443 | YP_003628492.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 45 |
| Plim_0443 | YP_003628492.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 44 |
| Plim_0443 | YP_003628492.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 44 |
| Plim_0443 | YP_003628492.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 44 |
| Plim_0443 | YP_003628492.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 44 |
| Plim_0443 | YP_003628492.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 43 |
| Plim_0443 | YP_003628492.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 42 |
| Plim_0443 | YP_003628492.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 42 |
| Plim_0443 | YP_003628492.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 42 |
| Plim_0443 | YP_003628492.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 42 |
| Plim_0443 | YP_003628492.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 42 |
| Plim_0443 | YP_003628492.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 42 |
| Plim_0443 | YP_003628492.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 41 |
| Plim_0443 | YP_003628492.1 | DNA-directed RNA polymerase subunit beta | CP003583.1.gene2745. | Protein | 1e-155 | 41 |
