Gene Information

Name : Tint_0123 (Tint_0123)
Accession : YP_003641866.1
Strain : Thiomonas intermedia K12
Genome accession: NC_014153
Putative virulence/resistance : Virulence
Product : microcompartments protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4577
EC number : -
Position : 136781 - 137119 bp
Length : 339 bp
Strand : +
Note : PFAM: microcompartments protein; KEGG: nwi:Nwi_1980 carboxysome structural peptide CsoS1B

DNA sequence : 
ATGGCAAGTGTGACGGGTATTGCCCTTGGCATGATCGAAACGCGTGGTCTGGTGCCCGCGATCGAAGCGGCTGACGCTAT
GTGCAAGGCAGCGGAAGTGCGACTGATCGGTCGCCAGTTCGTAGGAGGGGGCTACGTCACCGTACTGGTGCGTGGCGAAA
CCGGTGCGGTGAACGCGGCGGTGCGTGCAGGCGCCGATGCGTGCGAGCGCGTGGGCGACGGCCTGGTGGCTGCGCACATC
ATCGCCCGCGTGCACAACGAGGTGGAAGGCATACTGCCGACCAGCCCCGATGCAGAGGGCGGTGGCCGCGACGCGGAAAT
CACCTCCACCCGCAGTTAA

Protein sequence : 
MASVTGIALGMIETRGLVPAIEAADAMCKAAEVRLIGRQFVGGGYVTVLVRGETGAVNAAVRAGADACERVGDGLVAAHI
IARVHNEVEGILPTSPDAEGGGRDAEITSTRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 3e-12 60
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 3e-12 55
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 2e-11 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tint_0123 YP_003641866.1 microcompartments protein VFG1596 Protein 1e-12 60
Tint_0123 YP_003641866.1 microcompartments protein VFG1597 Protein 1e-12 55
Tint_0123 YP_003641866.1 microcompartments protein VFG1598 Protein 9e-12 51