|
Name : Tint_3106 (Tint_3106) Accession : YP_003644763.1 Strain : Thiomonas intermedia K12 Genome accession: NC_014153 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 3293184 - 3297287 bp Length : 4104 bp Strand : - Note : KEGG: vap:Vapar_0588 DNA-directed RNA polymerase, beta subunit; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 2; DNA-directed R DNA sequence : ATGTCCTACTCGTTCACTGAGAAAAAGCGCATTCGGAAAAGTTTTGGCAGCCGCCAAAGTGTTCTGGATGTCCCCTATCT GCTGGCTACGCAGATCAACTCCTACGAGGCCTTTTTGCAAAAAGACCTTCCCTTGCCGCAGCGCAAGGACGAAGGGCTGG AAGCGGCGTTCCGCGCCATTTTCCCCATCGTGTCGCACAACCAGTATGTGCGCATGGAATACAACGGCTACACCCTGGCA CGCCCGGTGTTCGACGTGCGCGAATGCCAGCAGCGCGGCCTGACCTTTGCGTCGGCGCTGCGGGCCAAGGTGCGCCTGAT CGTGATGGACCGCGAAGCGGCCAAACCCACGGTCAAGGAGGTGAAGGAGCAGGAGGTCTATATGGGCGAGATTCCGCTCA TGACCGACAAGGGTTCCTTCATCATCAACGGTACCGAGCGGGTGATCGTCAGCCAGCTGCACCGCTCGCCCGGCGTGTTT TTCGAGCACGACAAGGGCAAGACCCACAGCTCGGGCAAGCTGCTGTTTTCCGCCCGCATCATTCCTTACCGTGGCTCCTG GCTCGACTTCGAATTCGACGCCAAGGACATTCTGTATTTCCGCGTCGACCGTCGCCGCAAGATGCCGGTCACCATTCTGC TCAAGGCCCTGGGCCTGAATCCCGAGCAGATCCTGGCGCACTTCTTTGCCTTCGATCACATGCAGTTGATGGACGATGGC GCTTTGCTCGAATTCGTGCCCGACCATTTCAAGGGCGAAGTGGCCCGCTTCGACCTGATCGACCAGAATGGCAAAGTGGT TGTCGCCAAGGACAAGCGCATCAACACCCGCCACCTACGCGAGCTGGAGCAGGGCGGCACGCAACGCCTGTCGGTGCCGG AAGACTTCCTGCTGGGCAAAGTGCTGGCGCGCAACCTGGTGTCACAAGACACCGGCGAGATCGTGGCCCGCGCCAACGAG GAGCTCACCGAGGCGCTGCTGAAGAAGATCCGCGAAGCCGGCATTCAGCAGATCCAGACCCTCTACATCAACGATCTCGA CCAGGGCGCGTTCATTTCGCAAACCCTTCGCATCGACGAAGTGGCCGACCAGCTCGGCGCCAAGGTGGCGATCTACCGCA TGATGCGCCCCGGCGAGCCGCCGACCGAAGACGCCGTCGAGGCCCTGTTCAACCGCCTGTTCTTCGACGCTGACGCCTAC GACTTGTCGCGCGTGGGCCGCATGAAGTTCAACCGCCGCCTCGGTCGCGAAGAGATCGAAGGCGAGATGGTGCTGTCGCA TGAAGACATCATGGCGGTCATCAAGCTGCTGGTCGAGTTGCGCAACGGCCGCGGCGAAGTCGATGACATCGACCACCTCG GCAACCGCCGCGTGCGCTGCGTGGGCGAGCTGGCCGAGAACCAGTTCCGTGCCGGGCTGTCGCGCATCGAGCGCGCGGTG AAGGAACGTCTGGGCCAGGCCGAGACCGAAAACCTGATGCCGCACGACTTCATCAACTCCAAGCCCATTTCGGCGGCGAT CAAGGAATTCTTCGGCTCCTCGCAACTCTCGCAGTTCATGGACCAGACCAACCCGCTGTCGGAAATCACCCACAAGCGCC GCGTCTCGGCCCTGGGCCCGGGTGGTTTGACGCGCGAGCGCGCTGGTTTTGAAGTGCGCGACGTGCACCCCACGCACTAC GGCCGCGTCTGCCCCATCGAAACGCCGGAAGGCCCGAACATCGGTCTGATCAACTCGCTGGCGCTGTTCGCCCGGTTGAA CGAATACGGCTTCATCGAGACGCCTTATCGCCGCGTGATCGACCGTAAGGTGACTGACCAGATCGACTACCTCTCGGCCA TCGAAGAAGGCAAGTACGTCATCGCCCAGGCCAATGCCGGCATGGACGAGCACGGCATGCTCAACGACGAGTTGGTGTCT GCCCGCGAAGCTGGCGAGTCCATCATGGTCTCGCCCGAGCGGGTGCAGTACATGGACGTGTCGCCCAGCCAGATCGTGTC GGCCGCGGCCTCGCTCGTGCCCTTCCTGGAGCACGACGACGCCAACCGCGCGCTGATGGGCGCCAACATGCAGCGTCAGG CCGTGCCCGTGCTGCGTCCTGAAAAGCCGCTGGTCGGCACCGGGGTCGAGCGCGTGACCGCGGTCGACTCGGGGACCGTG GTCACCGCCTTGCGCGGCGGCGTGGTGGACTATGTGGACAGCGCCCGCATCGTGGTGCGCGTCAATGACGACGAAACCCA GGCGGGCGAAGTCGGCGTGGACATCTACAACCTTATCAAGTACCAGCGTTCCAACCAGAACACCAACATCCACCAGCGCC CGCTGGTCAAGCGCGGCGACAAACTCGCCAAGGGCGATGTCGTGGCCGACGGCGCTTCGACCGACCTCGGCGAACTGGCG CTGGGCCAGAACATGCTGGTGGCCTTCATGCCGTGGAACGGCTACAACTACGAAGACTCGATCCTGCTGTCCGAGCGCGT GGTGGCCGAAGATCGCTTCACCTCCATCCACATCGAAGAGCTGAACGTCCCGGCGCGCGACACCAAGCTGGGCTCCGAAG AGATCACTCGCGACATTCCCAACCTGTCCGAGCACCAATTGGCGCGTCTGGACGAGTCGGGCATCATTTACGTGGGCGCG GAAGTGGAAGCGGGCGACGTGCTGGTGGGCAAGGTCACCCCCAAGGGCGAGACCCAACTCACGCCGGAAGAGAAGCTGCT GCGCGCGATCTTCGGCGAAAAGGCGTCCGACGTGAAGGACACCTCGCTGCGCGTGCCCTCGGGCATGTACGGCACCGTCA TCGATGTGCAGGTGTTCACCCGCGAAGGCATCCCGCGTGACAAGCGCGCCCAGCAGATCATCGACGACGAGCTCAAGCGC TATCGCCTCGACCTCAACGACCAGATGCGCATCGTCGAGGCCGATACCTTCGACCGTCTGGGCAAGCTGCTCACTGGCAA GACCGCCAACGGCGGCCCGAACAAGCTGGCCAAGGGCGCAACCATCACCGCCGACTACCTGGGCGAGACCGACCGCTACA ACTGGTTCGACATCCGCCCGGCGGATGAAGCTCTGGCGCAGCAGATGGAACAGCTCAAGGACTCGCTGGAAAAGCGCCGC CACGCCTTCGACCTGATGTTCGAAGAGAAGCGCCGCAAGCTCACCCAGGGCGACGAGCTGCCCACCGGCGTGCTCAAGAT GGTCAAGGTTTACCTGGCCGTCAAGCGCCGCCTGCAGCCGGGCGACAAGATGGCCGGCCGTCACGGCAACAAGGGTGTGG TGTCCAAGATCGTTCCGGTCGAAGACATGCCGCACATGCCTGATGGCACCACGGTGGACATCGTGCTCAACCCGCTGGGC GTGCCGTCGCGCATGAACATCGGGCAGATTCTCGAAACCCACCTGGGCTGGGCCTCGATCGGCATCGGCAAGCGCGTCAA CGACATGCTGCAGTCGCATGCCAAGGCGGCCGAGTTGCGCAAATTCCTGGGCACGCTGTACAACTTCAGCGGCAAGCAGG AAGCGCTCGATCAGCTCAGCGACGCCGAAGTGCTTGAACTCGCCAGCAACCTCAAGGCCGGTTTGCCCATCGCCAGCCCG GTGTTCGACGGCGCCAGCGAAGCCGAAATCGGCCAGATGCTCGACCTGGCCTATCCCGACGACATCGCCGAGAAGCTGCA GCTCACCGCGGCGAAAAAGCAGGTCATGCTGACCGATGGCCGCACTGGCGAAGTCTTCGAGCGCCCGGTGACCGTGGGCA TCATGCATGTGCTCAAGCTGCATCACCTGGTTGACGACAAGATGCACGCCCGCTCCACCGGCCCGTACTCGCTGGTCACG CAGCAGCCGCTGGGCGGCAAGGCGCAGTTCGGCGGTCAGCGTTTCGGCGAGATGGAAGTCTGGGCGCTCGAAGCCTACGG CGCCTCGTATGTGCTGCAGGAAATGCTCACCGTCAAGTCCGACGATACGCAGGGCCGCACCAAGATGTACGAGAGCATCG TCAAGGGCGACCACATCATCGAAGCCGGGATGCCCGAGTCGTTCAACGTGCTGATCAAGGAAATCCGTTCCCTGGGTCTG GACATCGAACTCGAACGCAATTGA Protein sequence : MSYSFTEKKRIRKSFGSRQSVLDVPYLLATQINSYEAFLQKDLPLPQRKDEGLEAAFRAIFPIVSHNQYVRMEYNGYTLA RPVFDVRECQQRGLTFASALRAKVRLIVMDREAAKPTVKEVKEQEVYMGEIPLMTDKGSFIINGTERVIVSQLHRSPGVF FEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDAKDILYFRVDRRRKMPVTILLKALGLNPEQILAHFFAFDHMQLMDDG ALLEFVPDHFKGEVARFDLIDQNGKVVVAKDKRINTRHLRELEQGGTQRLSVPEDFLLGKVLARNLVSQDTGEIVARANE ELTEALLKKIREAGIQQIQTLYINDLDQGAFISQTLRIDEVADQLGAKVAIYRMMRPGEPPTEDAVEALFNRLFFDADAY DLSRVGRMKFNRRLGREEIEGEMVLSHEDIMAVIKLLVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLSRIERAV KERLGQAETENLMPHDFINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHY GRVCPIETPEGPNIGLINSLALFARLNEYGFIETPYRRVIDRKVTDQIDYLSAIEEGKYVIAQANAGMDEHGMLNDELVS AREAGESIMVSPERVQYMDVSPSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKPLVGTGVERVTAVDSGTV VTALRGGVVDYVDSARIVVRVNDDETQAGEVGVDIYNLIKYQRSNQNTNIHQRPLVKRGDKLAKGDVVADGASTDLGELA LGQNMLVAFMPWNGYNYEDSILLSERVVAEDRFTSIHIEELNVPARDTKLGSEEITRDIPNLSEHQLARLDESGIIYVGA EVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMYGTVIDVQVFTREGIPRDKRAQQIIDDELKR YRLDLNDQMRIVEADTFDRLGKLLTGKTANGGPNKLAKGATITADYLGETDRYNWFDIRPADEALAQQMEQLKDSLEKRR HAFDLMFEEKRRKLTQGDELPTGVLKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSKIVPVEDMPHMPDGTTVDIVLNPLG VPSRMNIGQILETHLGWASIGIGKRVNDMLQSHAKAAELRKFLGTLYNFSGKQEALDQLSDAEVLELASNLKAGLPIASP VFDGASEAEIGQMLDLAYPDDIAEKLQLTAAKKQVMLTDGRTGEVFERPVTVGIMHVLKLHHLVDDKMHARSTGPYSLVT QQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSDDTQGRTKMYESIVKGDHIIEAGMPESFNVLIKEIRSLGL DIELERN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 64 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 64 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Tint_3106 | YP_003644763.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 78 |
| Tint_3106 | YP_003644763.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 74 |
| Tint_3106 | YP_003644763.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 72 |
| Tint_3106 | YP_003644763.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 68 |
| Tint_3106 | YP_003644763.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 65 |
| Tint_3106 | YP_003644763.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 65 |
| Tint_3106 | YP_003644763.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 65 |
| Tint_3106 | YP_003644763.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 65 |
| Tint_3106 | YP_003644763.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 64 |
| Tint_3106 | YP_003644763.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 64 |
| Tint_3106 | YP_003644763.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 64 |
| Tint_3106 | YP_003644763.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 64 |
| Tint_3106 | YP_003644763.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 64 |
| Tint_3106 | YP_003644763.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 64 |
| Tint_3106 | YP_003644763.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 64 |
| Tint_3106 | YP_003644763.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 64 |
| Tint_3106 | YP_003644763.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 64 |
| Tint_3106 | YP_003644763.1 | DNA-directed RNA polymerase subunit beta | AM180355.1.gene120.p | Protein | 0.0 | 47 |
