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Name : Tint_0082 (Tint_0082) Accession : YP_003641825.1 Strain : Thiomonas intermedia K12 Genome accession: NC_014153 Putative virulence/resistance : Unknown Product : protein-export membrane protein SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 87089 - 89059 bp Length : 1971 bp Strand : + Note : KEGG: aav:Aave_4644 preprotein translocase subunit SecD; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein DNA sequence : ATGAATCGCTATCCCTGGTGGAAATATCTCATCATGGTCGTCGTCCTGGTGGTTGGCGTGGTGTATGCGCTGCCCAATCT GTACGGCGAATCGCCCTCAGTGCAGATTTCAAGCACCAACGGCGGCAAGGTCGACAACGCCCTGCTGCTCAAAGGCGAGC AGATTCTGGACGCGGCTAACCTCAAGCCCGATTCGGCTGACTTCAACGGCGCCACGGTCAACTACCGCTTCAGTAACACC AGCGTGCAGCTCAAGGCGCGCGATGTGCTGGCCAAGGCGCTCAACCCCAATGCGGACGATCCGCGGTATGTGGTCGCGGT CAATCTGCTGTCGCGTTCGCCCGCGTGGTTGACGGCGCTCAACGCCAATCCCATGTACCTCGGTCTCGACCTGCGCGGGG GCGTGCACTTCCTGCTGCAGGTGGACATGCAGGCGGCCGTGCACAAAAAGCTCGACTCGATTTCCGGCGAACTGCGCCGC GATTTGCGCGACAAAGACGCGCGCTACACCAAGCTCGAACGCGTGGGCGACACCCTTCAAGGCGTTTTTGTCGATGCCAG CGCACTGAACACGGCCAAGGAACTCATCACCCGCCAGCATCCCGATTTGCAGCTGGCCCCGCAAGCGCCCGCAGGCCCCT ACAGCCTCAGCGCCAGTCTGACGCCTGCCGCCGTGTCGCAGGAAGAAGACTACGCCATCAAGCAGAACATCCAGACCCTG CACAACCGCATCAACGAACTCGGCGTGGCCGAGCCCATCATCCAGCAACAGGGTCGCGACCGGGTGGTGGTCGAGCTGCC CGGTATTCAGGACGTGGCCCGGGCCAAGGACATTCTCGGCCGCACCGCCTCACTCGAAGTACGCATGGTGGACGACAGCG CCGCAGCCCAGGCCGCGCTGGCCGGACAGGGCCCGCTGCCCGCCGGCGACCAGATCTTTCCGGACCGCGATGGCGGCAAA CTGGTGGTCAAGCGCGACGTGCTGCTGACCGGCGACAACCTCACCGACGCCCAGCCCGGCTTCGACCAGCAGACCAACGA GCCCGCCGTGTTCCTCACCCTCGACTCCAAGGGCTCCCGCATCTTCCAGCAAGTCACGCGGGAGAACGTGGGCAAGCGCA CCGCCATGATTCTGTTCGACCGCGGCCGCGGCGAAATCATCACCGCCCCGGTGATCCGAAGCGAAATCGCCGGCGGCCGG GTACAGATTTCCGGCCACATGACCGTGCAGGAAGCCAACGACACCGCGCTGCTGCTGCGCGCCGGTGCGCTGGCTGCGCC GATGAACATCATCGAAGAGCGCACCGTCGGCCCCAGCCTGGGGCAGCAGAACATCAGCCAGGGCTTCCACTCGGTGACCT GGGGCTTCGTCGCCATCGTCATTTTCATGTCGATCTACTACATGTTCTTCGGCGTGGTGTCGTCCATCGGTCTGGCGGTC AACCTGCTGCTGCTGGTGGCGGTGCTCTCCATGCTGCAGGCCACGCTCACTCTGCCCGGCATCGCGGCCATGGCGCTGGC GCTGGGTATGGCCATCGACTCGAACGTGCTGATCAACGAGCGCATCCGCGAGGAACTGCGTAACGGCGCCAGTCCGCAAA ACGCGATTTTCCACGGCTACGAACGCGCCTGGGCCACCATCTTCGACTCCAACGTCACCACGCTGATTGCCGGGGTCGCG CTGCTGATCTTCGGCTCGGGCGCCATTCGCGGATTCGCCGTGGTGCACGTGCTGGGTATTCTCACCTCGATGTTCTCGGC GGTGTTCTTCTCGCGCGGCATCATCAACCTCTGGTATGGCCGCAAGCGCCGCCTGCACAGCATCTCCATCGGCCAGATCT GGAAGCCGCAAGCGGCTGAGGCCACGGCGGGGGCGCTGTCGTCCGGCGCCGCGAGTGACGCGGTGAAAGCTGGAAAGCCG CTGGACGCACCCACGCCGCGCACCACCAAGCCGCGCCGCAAGGTGCATTGA Protein sequence : MNRYPWWKYLIMVVVLVVGVVYALPNLYGESPSVQISSTNGGKVDNALLLKGEQILDAANLKPDSADFNGATVNYRFSNT SVQLKARDVLAKALNPNADDPRYVVAVNLLSRSPAWLTALNANPMYLGLDLRGGVHFLLQVDMQAAVHKKLDSISGELRR DLRDKDARYTKLERVGDTLQGVFVDASALNTAKELITRQHPDLQLAPQAPAGPYSLSASLTPAAVSQEEDYAIKQNIQTL HNRINELGVAEPIIQQQGRDRVVVELPGIQDVARAKDILGRTASLEVRMVDDSAAAQAALAGQGPLPAGDQIFPDRDGGK LVVKRDVLLTGDNLTDAQPGFDQQTNEPAVFLTLDSKGSRIFQQVTRENVGKRTAMILFDRGRGEIITAPVIRSEIAGGR VQISGHMTVQEANDTALLLRAGALAAPMNIIEERTVGPSLGQQNISQGFHSVTWGFVAIVIFMSIYYMFFGVVSSIGLAV NLLLLVAVLSMLQATLTLPGIAAMALALGMAIDSNVLINERIREELRNGASPQNAIFHGYERAWATIFDSNVTTLIAGVA LLIFGSGAIRGFAVVHVLGILTSMFSAVFFSRGIINLWYGRKRRLHSISIGQIWKPQAAEATAGALSSGAASDAVKAGKP LDAPTPRTTKPRRKVH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 1e-87 | 41 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 7e-88 | 41 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 7e-88 | 41 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 7e-88 | 41 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 2e-88 | 41 |
