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Name : Arnit_2617 (Arnit_2617) Accession : YP_003656772.1 Strain : Arcobacter nitrofigilis DSM 7299 Genome accession: NC_014166 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 2629959 - 2634104 bp Length : 4146 bp Strand : - Note : COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; InterProIPR007121:IPR010243:IPR007644:IPR007642:IPR 007645:IPR019462:IPR007120:IPR007641; KEGG: abu:Abu_1884 DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2 domain DNA sequence : ATGCTAAATTCTTTAAAATCTGGTAATAGGCTTAGAGTCGATTTTGCTAAAAATCCACAACATATTGAAATTCCTAATTT ATTACAATTACAACAAAATTCGTATGACAACTTCTTAATGGTCGGAAAAGAGAGCAGAACTGATGCTGGAATTGAAAAAG TATTTAAATCAATTTTTCCAATTCATGATGCTCAGGGTAGAATTACTCTTGACTATATAGAAAGTGAAGTGGGTAAACCA AAATATGACGTAAGAGAGTCTATGGTTAGAGGTCTTACTTACTCAATCCCATTAAAAATCAAAATAAGATTAACACTTTG GGATCTTAACGAAAAAACTGGTGAAAAAATCGGCGTTAAAGATATGAAAGAACAATCTTTATTCGTTAGAGAAATACCTT TAATGACAGATAGAACATCATTTATTGTAAATGGTGTTGAAAGAGTTGTTGTAAACCAATTACATAGATCTCCTGGTGTT ATCTTCAAAGAAGAAGAATCAAACACTGCTGGAAATAAATTAATCTATACTGGACAAATTATTCCAGATAGAGGTTCTTG GTTATATTTTGAATATGATGCAAAAGATGTATTATATGTAAGAATCAACAAAAGAAGAAAAGTTCCTGTAACTATTCTTT TTAGAGCATTAGGATATTCTAAAGAAGATATTATCAAAATGTTCTACCCAATTTTAAATATTAAAATTAAAAACAATAAA TTCTTAACTGAATTTAGTCCTGAAGATTTTACAGGAAGAGTTGAATTTGATATTAAAGATGATAAAGGTAATTTAGTAAT TGCTGCTGGAAAAAGATTAACTGCTAGAAAAGCTAAAGCCTTAGTTGATGGTGGATTAAAATTAGTTGAATACCCAGTTG AATTATTGATGGATAGAAGTACTGCTGGTACAATTTTTGATCCAGAATCAGGTGAAGTATTATTTGATTCTTTAACTCAT TTAGATGAATTAAAACTAAAAAAACTTCTTGACTTAGGTTTTGAATCTTTTGATATCGCAAATGATTTAGCTGAAGGTGT TGATGATTCTATTATCAACGCATTTGCTGCAGATGCTGAGTCTTTAAAATTATTAAGACAAACTGAGCAATTAGAAGATG AAAATGATTTAGCTGCTATTAGAATTTACAAAGTAATGAGACCAGGTGAGCCTGTAACTAAAGAAGCTGCTAAAGATTTC GTTAAAAAATTATTCTTTGATCCAGAAAGATATGACTTAACTAAAGTGGGAAGAATGAAAATGAACCACAAGTTAGGTGT AAATGTTCCTGAATATGTTACAACACTTACTTATGAAGATGTTATTAAAACTGTTCAATATCTTGTAAAAGTTAAATCTG GTCATGGGCATATTGATGATAGAGATCACTTAGGTAACAGAAGAATTAGAGCTATTGGTGAGTTACTTGCTAATGAAATG CATTCTGGTTTAATCAAAATGCAAAAAGCTATTAGAGATAAAATGACTACATTATCTGGTACATTAGAAGATATTATGCC ACATGATTTAGTTAACTCTAAAATGATTACATCAACAATTACTGAGTTCTTTACATCTGGTCAATTATCACAATTTATGG ATCAAACTAACCCATTATCAGAAGTTACTCATAAAAGAAGACTTTCTGCACTTGGTGAAGGTGGACTTGTAAAAGAGAGA GCTGGATTTGAAGTAAGAGATGTTCACGCAACTCACTACGGAAGAATTTGTCCAGTTGAAACTCCAGAGGGACAAAATAT TGGTCTTATCAATACTTTATCTACATTTGCAAAAGTAAATGAATTAGGATTTATTGAAGCACCATATAAAAAAGTTAATG ATGGTATCGTTTCAAATGAAATTATCTATGTTACTGCAACTCAAGAAGAGGGCTTATTAATTGCTCCTGGTTCTACTAAA GTTGATGACAATGGTAAAATTGTTGAGCCTCTAATTGAAGCTAGACAAGATGGTGAAATTCTAATTGTTGAAAGAGGGAA GGTTAATTTAATTGACATCTCTTCTCAAATGGTTATGGGTGTTGCTGCTTCATTAATTCCATTCTTAGAACATGATGATG CCAATAGAGCACTTATGGGATCGAATATGATGAGACAAGCAGTTCCATTATTAAGACCAAATGCTCCAATAGTTGGAACT GGTTTAGAAAAAACAGTTGCAAGAGATGCTTGGGAAGCTATTAAAGCTGATAGAACAGGTATTGTTGAAAAAGCTGATGC TAAAAATATTTACGTTAGAGGTGAAGATGAAAATGGTGCATTTATTGACCATTATAGTGTAAACAAAAACGTAAGAACAA ATAATAATACATCTTTTGGGCAAAGAATTGCAGTAAAAGAGGGTGATATTGTTGAAAAAGGTCAAGTAATTGCTGATGGT CCTTCAATGGATAAAGGTGAATTAGCAGTTGGTGTTAATGCGTGTGTTGCCTTCATGCCATGGAATGGATATAACTACGA AGATGCAATTGTATTATCACAAAGACTAATTAAAGAAGATGCCTTTACTTCTATTCATATTTATGAAAAAGATGTAGAGT GTAGAGAACTTAAACATGGTAATGAAGAGATAACAAGAGATTTACCAGGTGTTAAAGATGAATCAATTACACATCTTGAT GAATCAGGAATTGTAAAAGTTGGTACATTTATCAAGCCAGGTATGATTATGGTTGGAAAAGTTACACCAAAAGGTGAAAT TAAACCAACTCCTGAAGAGAGACTATTAAGAGCAATCTTTGGTGAAAAAGCTGGTCATGTTATTAATAAATCACTTTACT GTCCTACTTCAATGGAAGGTACAGTTGTTGATGTAAAAGTATTTACTAAAAAAGGTTATGAAAAAGATTCAAGAGCAGTT GCTGAAATTGAATCAGAAAAAGCAGAACTTGATTTAAAACATCATGATAAATTATTAATGCTTGATAGAGAAGAGATTTT AAAAATCAATGATTTATTATCAAAAGCTCTACTAGCTAAAGATGTTGATTTAGACGATGTAGTTTATAAAAAAGGTCAAG TTATTCCTTTAGATGTATTATCAAGTGTAAATAGATTTGCTATGAAAAAAGTAGTATCTTCTTATGATAAAGATGTTGAA AAAAAATACAATGATATTAAAGAGTATTTTATTAATCAAAAATCTAGATTAAGAACTGACCATGAAGAAAAACTTGAAGT ATTAGAACATGATGATATTTTACAATCAGGTGTAATCAAACAAGTTAAAGTATATGTAGCAACTAAGAGAAAAATCAAAG TTGGGGATAAAATGGCTGGACGACATGGAAACAAAGGTATTGTTTCTAACATCGTACCACAAGTTGATATGCCTTACTTA GAAGATGGTTCAACTGTTGATGTTATTTTAAATCCACTTGGGGTTCCATCACGGATGAATATTGGACAAATTTTAGAAGT TCACTTAGGATTAGTAGGTAAAAGACTTGGAACTCAAATCCAAGATATTTTTGATGCTAAGAAAACTGAATTTGTATCTG AATTAAGAGCTAAAATGACAGAAATTGCTGATGTTGCAAAACTTATGAATGGTAAAGAATTTTTAGCTAAATTAAGTGAT GATGAATTAGTTGATTATGCACAAGATTGGACAAAAGGTGTTAGATTTGCAACTCAAGTATTTGATGGTGTAAAAGAAGA TGAGTTCTTAAAACTATTTGAATTAGCAAAAATTGACTTAGATGGTAAAACTAATCTTATTGATGGTAAAACTGGTGATA AGATGAAAGAGAGAGTAAATGTAGGTTACATGTATATGCTAAAACTACATCACTTAGTTGATGAAAAAGTTCATGCAAGA TCTACTGGACCTTATTCACTTGTAACACAACAACCAGTTGGTGGTAAAGCACTATTTGGTGGTCAAAGATTTGGAGAGAT GGAAGTTTGGGCATTGGAAGCTTATGGAGCAACTGCTGTTCTAAAAGAAATGCTTACAACAAAATCAGATGACGTAGAAG GAAGAACGAGAGCTTATAGAGCAATTTCAAACGGTGAAAATGTTCCAGATTCAGGTGTTCCTGAAACTTTCTTTGTATTA ACAAAAGAGTTAAAAGCTTTAGGTTTAGATGTAGAGATTTTTGACGAGGTAGAAAATAATGAGTAA Protein sequence : MLNSLKSGNRLRVDFAKNPQHIEIPNLLQLQQNSYDNFLMVGKESRTDAGIEKVFKSIFPIHDAQGRITLDYIESEVGKP KYDVRESMVRGLTYSIPLKIKIRLTLWDLNEKTGEKIGVKDMKEQSLFVREIPLMTDRTSFIVNGVERVVVNQLHRSPGV IFKEEESNTAGNKLIYTGQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTILFRALGYSKEDIIKMFYPILNIKIKNNK FLTEFSPEDFTGRVEFDIKDDKGNLVIAAGKRLTARKAKALVDGGLKLVEYPVELLMDRSTAGTIFDPESGEVLFDSLTH LDELKLKKLLDLGFESFDIANDLAEGVDDSIINAFAADAESLKLLRQTEQLEDENDLAAIRIYKVMRPGEPVTKEAAKDF VKKLFFDPERYDLTKVGRMKMNHKLGVNVPEYVTTLTYEDVIKTVQYLVKVKSGHGHIDDRDHLGNRRIRAIGELLANEM HSGLIKMQKAIRDKMTTLSGTLEDIMPHDLVNSKMITSTITEFFTSGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKER AGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTFAKVNELGFIEAPYKKVNDGIVSNEIIYVTATQEEGLLIAPGSTK VDDNGKIVEPLIEARQDGEILIVERGKVNLIDISSQMVMGVAASLIPFLEHDDANRALMGSNMMRQAVPLLRPNAPIVGT GLEKTVARDAWEAIKADRTGIVEKADAKNIYVRGEDENGAFIDHYSVNKNVRTNNNTSFGQRIAVKEGDIVEKGQVIADG PSMDKGELAVGVNACVAFMPWNGYNYEDAIVLSQRLIKEDAFTSIHIYEKDVECRELKHGNEEITRDLPGVKDESITHLD ESGIVKVGTFIKPGMIMVGKVTPKGEIKPTPEERLLRAIFGEKAGHVINKSLYCPTSMEGTVVDVKVFTKKGYEKDSRAV AEIESEKAELDLKHHDKLLMLDREEILKINDLLSKALLAKDVDLDDVVYKKGQVIPLDVLSSVNRFAMKKVVSSYDKDVE KKYNDIKEYFINQKSRLRTDHEEKLEVLEHDDILQSGVIKQVKVYVATKRKIKVGDKMAGRHGNKGIVSNIVPQVDMPYL EDGSTVDVILNPLGVPSRMNIGQILEVHLGLVGKRLGTQIQDIFDAKKTEFVSELRAKMTEIADVAKLMNGKEFLAKLSD DELVDYAQDWTKGVRFATQVFDGVKEDEFLKLFELAKIDLDGKTNLIDGKTGDKMKERVNVGYMYMLKLHHLVDEKVHAR STGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGATAVLKEMLTTKSDDVEGRTRAYRAISNGENVPDSGVPETFFVL TKELKALGLDVEIFDEVENNE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 47 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Arnit_2617 | YP_003656772.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 48 |
| Arnit_2617 | YP_003656772.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 47 |
| Arnit_2617 | YP_003656772.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 47 |
| Arnit_2617 | YP_003656772.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 47 |
| Arnit_2617 | YP_003656772.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 47 |
| Arnit_2617 | YP_003656772.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 47 |
| Arnit_2617 | YP_003656772.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 47 |
| Arnit_2617 | YP_003656772.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 47 |
| Arnit_2617 | YP_003656772.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 47 |
| Arnit_2617 | YP_003656772.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 47 |
| Arnit_2617 | YP_003656772.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 47 |
| Arnit_2617 | YP_003656772.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 47 |
| Arnit_2617 | YP_003656772.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 47 |
| Arnit_2617 | YP_003656772.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 47 |
| Arnit_2617 | YP_003656772.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 46 |
| Arnit_2617 | YP_003656772.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 45 |
| Arnit_2617 | YP_003656772.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 45 |
