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Name : clpC (PFREUD_20250) Accession : YP_003688934.1 Strain : Propionibacterium freudenreichii CIRM-BIA1 Genome accession: NC_014215 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 2181449 - 2184025 bp Length : 2577 bp Strand : - Note : Belongs to the clpA/clpB family. ClpC subfamily. The protein has been identified by proteomics as a 99 kDa protein induced by heat.Several 90 to 100 kda clp chaperones are expressed as disctinct heat shock proteins DNA sequence : ATGTTTGAACGCTTTACCGACCGCGCGCGCCGCGTCATCGTGCTGGCCCAGGACGAAGCGAAGATGCTGAATCACAACTA CATCGGCACCGAGCACATCCTGTTGGGCCTCATCCACGAAGGTGAAGGCGTCGCGGCGAAGGCTCTGGAGCAGATGGGCA TCTCGCTGGAGGCTGTTCGCGAACAGGTCATCGAGATCATCGGCCAGGGCTCCACCCCGCCCACCGGTCACATTCCGTTC ACGCCCCGCGCCAAGAAGGTGCTTGAGTACTCGCTGCGCGAGGCGTTGCAGATGAACCATTCATATATCGGCACCGAGCA CATTCTGCTGGGCCTCATCCGCGAGGGTGAAGGCGTGGCTGCCCAGGTGCTCATCAAGCTTGGGGCTGACCTCAATCGCG TCCGCACCACCGTGCTGCAGTTGCTCTCGGGCTACCAGGAAGAAGGCGGTGGCCAGCCGGCTACCGCTGGCGCTCCCGAA ATGGGCCCCGGCACCAGCACGAACAATGGTGCGCTTGACCAGTTCGGACGCAATCTCACCCAGGCTGCCCGCGATAACAA GCTCGACCCCGTGATCGGTCGTCAGAAGGAAGTCGAGCGCGTGATGACGGTGCTGAGCCGTCGCACGAAGAACAACCCCG TGCTGATCGGCGAACCCGGCGTCGGCAAGACTGCCGTGGTCGAGGGCCTGGCCCAGGCGATCGTGCGCGGAGATGTTCCC GAAACCCTGCGTGACAAGCAGATCTACACCCTTGACCTGGGTGCGCTGGTTGCCGGCTCCCGTTACCGTGGCGACTTCGA AGAGCGCTTCAAGAAGGTGCTCAAGGAGATCAAGACCCGTGGCGACGTGATGCTGTTCATCGACGAGCTGCACACCCTGG TGGGTGCCGGTGCCGCCGAGGGCGCCATCGACGCGGCAAGCATCCTCAAGCCGATGCTTGCTCGTGGCGAGCTGCAGACC ATCGGTGCCACCACGCTGGATGAATATCGCAAGCACATCGAGAAGGACGCCGCCCTTGAGCGTCGTTTCCAGCCCATCCA GGTGGATGAGCCCTCGGTGCAGCTGACGATCGAGATCCTCAAGGGGCTGCGTGATCGTTACGAGGCCCACCACCGCGTCA CCATCACCGACGAGGCCCTGAGCGCGGGCGCCAACCTGGCCGACCGCTACATCCAGGATCGGTTCCTGCCTGACAAGGCC ATCGACCTGATCGACGAGGCCGGTGCACGCATGCGCATCGCGCGCATGACTGCGCCGCCGGACCTGCGCGAGTTCGACGA CAAGATCGCCGCCACCCGTGCAGAGAAGGAGGCCGCGATCGACCATCAGGACTTCGAGGCCGCTGCCAAGCTGCGTGACG ACGAGCGCAAGCTCACCGCCGCGCGTGCCGAGAAGGAGACTGCCTGGCGCGAAGGCGAGTCCGATACGCCCGCCGTCGTG GGCGAGGAGGAGATCGCCGAGGTGCTGTCCAGCTCGACGGGTGTGCCGGTGGCACGCCTCACCGAGGAGGAGTCGCAGCG CCTGCTCAACATGGAGGACGAGATCCACAAGCGCTACATCGGGCAGGACGAGGCCGTCAAGGCCATCTCCCGTTCGATCC GGCGTACTCGTGCCGGCCTGAAGGACCCGAACCGTCCCAGTGGCTCGTTCATCTTCGCCGGCCCGTCCGGCGTCGGCAAG ACCGAGCTCACCAAGGCGCTCACCGAGTTCCTGTTCGGCGACGAGGATGCGCTGATCACCCTGGACATGTCGGAGTACTC CGAGAAGCACACGGCCAGCCGTATGTTCGGCTCGCCGCCCGGATACGTCGGCTACGAAGAGGGTGGCCAGCTCACCGAGA AGGTGCGCCGCAAGCCGTTCAGCGTGATCCTGTTCGACGAGATCGAGAAGGCACACCCCGATATCTTCAACTCGCTGCTG CAGATTCTGGATGAAGGTCGCCTGACCGACGCCCAGGGTCGTGTGGTCGACTTCAAGAACACCGTGATCGTCATGACCAC GAACCTTGGTTCGCGCGACATCAGTCGTGGCGTCAACCTCGGGTTCTCGAAGACCGGCGACACCGAGAACAGCTACGAGC AGATGAAGTCGAAGGTGAGCGAGGAGCTGAAGCAGCACTTCCGCCCCGAGTTCCTCAACCGCGTTGACGAAGTGGTGGTG TTCCACCAGCTGTCGCAGGACGACATCCTGCACATCGTCGACCTCATGGTTGGCCAGATCGAGAATCGCCTTGGCGACCG CGACATGGGTATCGAGCTGACGCCCGCTGCTCGTGAACTGGTGGGCAAGCGCGGCTTCGACCCGGTGCTCGGTGCTCGTC CCCTGCGTCGTGCGATCCAGCGCGACATCGAGGACCCGATCTCGGAGAAGATCCTCTACGGCGACCTCAAGGCCGGTTCG ATCGTGCTGGTCGACGTGGCTGAGGGTGCCACCGAGAAGTCGACGGAGGCGTTCACCTTCAAGGGGATGCCGAAGCACGA CGAGGTGACCGACTCGGAGTTCGCACAGCTGACAGGTGCGGGAAGCACTGGCGGAGACGCCGGTCCGGCTGAGCCGCAAG CGCCCAGCGCTTCATAA Protein sequence : MFERFTDRARRVIVLAQDEAKMLNHNYIGTEHILLGLIHEGEGVAAKALEQMGISLEAVREQVIEIIGQGSTPPTGHIPF TPRAKKVLEYSLREALQMNHSYIGTEHILLGLIREGEGVAAQVLIKLGADLNRVRTTVLQLLSGYQEEGGGQPATAGAPE MGPGTSTNNGALDQFGRNLTQAARDNKLDPVIGRQKEVERVMTVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVRGDVP ETLRDKQIYTLDLGALVAGSRYRGDFEERFKKVLKEIKTRGDVMLFIDELHTLVGAGAAEGAIDAASILKPMLARGELQT IGATTLDEYRKHIEKDAALERRFQPIQVDEPSVQLTIEILKGLRDRYEAHHRVTITDEALSAGANLADRYIQDRFLPDKA IDLIDEAGARMRIARMTAPPDLREFDDKIAATRAEKEAAIDHQDFEAAAKLRDDERKLTAARAEKETAWREGESDTPAVV GEEEIAEVLSSSTGVPVARLTEEESQRLLNMEDEIHKRYIGQDEAVKAISRSIRRTRAGLKDPNRPSGSFIFAGPSGVGK TELTKALTEFLFGDEDALITLDMSEYSEKHTASRMFGSPPGYVGYEEGGQLTEKVRRKPFSVILFDEIEKAHPDIFNSLL QILDEGRLTDAQGRVVDFKNTVIVMTTNLGSRDISRGVNLGFSKTGDTENSYEQMKSKVSEELKQHFRPEFLNRVDEVVV FHQLSQDDILHIVDLMVGQIENRLGDRDMGIELTPAARELVGKRGFDPVLGARPLRRAIQRDIEDPISEKILYGDLKAGS IVLVDVAEGATEKSTEAFTFKGMPKHDEVTDSEFAQLTGAGSTGGDAGPAEPQAPSAS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 71 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 5e-95 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_003688934.1 | ATP-dependent Clp protease ATP-binding protein | VFG0079 | Protein | 0.0 | 60 |
| clpC | YP_003688934.1 | ATP-dependent Clp protease ATP-binding protein | VFG0080 | Protein | 5e-156 | 50 |
