|
Name : DaAHT2_1459 (DaAHT2_1459) Accession : YP_003690773.1 Strain : Desulfurivibrio alkaliphilus AHT2 Genome accession: NC_014216 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase, beta subunit Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 1706891 - 1711012 bp Length : 4122 bp Strand : - Note : TIGRFAM: DNA-directed RNA polymerase, beta subunit; KEGG: dps:DP1117 DNA-directed RNA polymerase, beta-subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 2; DNA-directed RNA p DNA sequence : ATGCAGATGACCAGACGAATCCGCAAGAACTTTGCCAAAACCAGGGCGATAGTTGAGAAACCGCATCTTATCGAGATGCA GAGCCGTTCCTACGAAAAGTTTCTGCAGATGGAAACTCCTCCGGACCAGCGCCTTGATGAAGGGCTGCAGGGGATCTTCA AGAGTGTGTTCCCCATCAAGGACTTCAAGGATGCCTGTTCCCTGGAATTTGTCAACTACACTTTTGGTGAGCCCAAGTAC ACCGTTGAGGAGTGTATCCAGCGGGGGCTGACCTTCGAAGTGCCGGTCAAGATGACGGTACGTCTGGTCACCTATGACAC CGATCCTGACAGCGGGGCCCAGAGCATCCGTGATATTAAGGAGCAGTCGGTTTACCTGGGCAGTATTCCGCTGATGACCA AGGCCGGGGTGTTTGTAATCAACGGCACCGAGCGGGTTATTGTCAGCCAGCTGCAGCGCTCGCCGGGCCTTTTCTATACC CATGACGGGGGCAAGACCCATGCCGGCGGCAAGCTGTTGTACTCCGCCCGTATTATCCCGGTGCGCGGCTCCTGGGTGGA CCTGGAGTTTGACGCCAAAGATATTCTTTATGTCCGTATCGACCGCCGCCGCAAGTTCCCGGTCACCACTCTGCTCAAGA CCTTAGGCTACGGCAGCGAAGATCTGCTGCGCTATTTCTACCAGATCGAATCGGTCAGTATTGAAGAAGGCAAGCTGAAA AAGGGCTTTGACCCTGAAACCATGGTGGGCCAGCGTCTGCCCCACGACCTGATCAGCCCCGCCGATGGCGAAGTGCTGGC TCGCAAGGGCCGCAAGGTGGGTAAGGCTTTGGCGCGCAAGATTGCCGATGCCGGGATTACCGGCCTGGAGATTGAGGCCG CCGACCTGGTGGGCAAGGTTACCGCCAGCCCGGTGGTTAACCCCGAGACCGGCGAGATCATGATCCCGGTTAATACCGAA CTCAGCGAAACCATGCTGGAGGAAATTAGTGCCGCCGGGGTTAAAAACTTTGATATTTTGCTGATCGACGGCATCAAGGT CAGCGACTCGTTCCGCAAAACCCTGGCCCTGGACCGGGTGGAGAGCCGGGAAGACGCGTTGATCGAAATTTATCGCCGCT TGCGCCCCAGCAGCCCGCCGACCCTGGAAGTGGCGGAAAGCTTTTTTAACAATCTCTTTTTCAGCCCGGAACTTTACGAT CTCTCGGTGGTGGGGCGCTTCAAATTGAATGCCCGCCTGGGGATCGATACCGATATCAATATTCGTACCCTGACCGTGGA GGATATCATGCTGGCGGTGCTGCACCTGGTGCGGCTCAAGGACAGCCAGGGCCCCATCGATGATATCGATCATCTGGGCA ACCGTCGGGTGCGTACGGTGGGCGAACTGGTGGAAAACCAGTACCGCATGGGGCTGGTGCGCATGGAGCGGGCCATCAAG GAGCGGATGAGCCTCCAGGAGGTGGAAAGCCTGATGCCCCACGACCTGATCAACCCCAAGCCGATTACCGCGGCGATCAA GGAGTTTTTCGGGACCAGCCAGCTCTCCCAGTTCATGGATCAGACCAACCCCCTGTCGGAAGTCACCCACAAGCGGCGCT TGAGTGCCCTGGGACCCGGTGGTCTTTCCCGGGAGCGGGCCGGCTTCGAGGTGCGCGATGTGCATCCCACCCATTATGGT CGGATCTGCCCGGTTGAGACCCCGGAAGGCCCCAACATCGGCCTGATCGTCTCGTTGGCCTCTTATGCCCGGGTCAATGA GTACGGTTTCATTGAAACCCCTTACCGCAAGGTGGAAAACCGCAAGGTCAGCAACCAGATCGAATACATGACCGCGCTTG ACGAGGAAGATCAGGTCATCGCCCCGGCTCGCAGCGAGACCGACGGCAAGGGTAAGCTGGTTGACGGGCCGCTGATTGCC CGCCAGGCCGGCGAGGTAATGATCAGCATCGCCGACGAAGTAACCTACATGGACGTCTCTCCCAATCAGCTGGTGAGCGT TGGGGCCTCGCTGGTTCCTTTCCTGGAAAACGACGACGCCAACCGGGCCCTGATGGGTTCCAACATGCAACGCCAGGGTG TGCCCTTGTTGCGTTCCGAGGCTCCCCTGGTGGGAACCGGGCTGGAAAGCGCGGTGGCCCAGGACTCCGGGGTTTGTCTG CTGGCCGGCGGCGACGGGGTGGTGGAAGAGGTGGACGCCAACCGCATCGTGGTCCGCTACGATGAGCCGGGCACCGATGG TTTTACCACCGGCATCGGCATCTATCGGCTGGAAAAGTACAAGAAGTCCAACCAGAATACCTGCTTTACCCAGCGGCCGC TGGTGGAGCCCGGTGTGCGGGTGAAAAAGGGTGATATCCTGGCCGACGGTCCGGCCTGCGATCATGGTGAGCTGGCCCTG GCCAAGAATGTCACCGTGGCCTTCATGCCCTGGCGCGGCTATAACTACGAAGACTCTATTCTGGTTAACGAACGGCTGCT GAAAAATGACACCTATACCTCTTTCCATATCGAAGTTTTTGAAACCGTGGCCCGGGATACCAAGCTGGGCAAGGAAGAGG TGACCCGGGATATTCCCAACGTCAGCGAGGAGGCCCTGCGCAACCTCGATGAATCGGGGATCGTGCGGGTCGGGGCGGAG ATCAAGGCCGGCGATATCCTGGTGGGCAAGATCACCCCCAAGGGGGAAACCCAGCTGTCGCCGGAAGAGAAACTGCTGCG GGCCATTTTCGGCGAAAAGGCCGGCGATGTAAAAGATACCTCGTTGCGCGTACCCCCCGGCGTCGAAGGGGTGGTGGTGG ATGCCAAGGTATTCTCCCGTAAAGGGGTGGAGAAGGATGAACGCAGCTTGGCCATTGAAGAGGCCGAGATCAAGGCGCTG GAGCGCGACCTTGAGGATGAACTCAACCTGCTGGCCCGGAGTGTACGCAACGGCCTGGCCGACCTGCTGGTGGGCAAGAA GGTCAAAAATGCGGTGAAGAATCGCAAGGGCGAAGAGCTGCTGGCCAAAGACAAAAAAATCACCCGGGAAGTGCTGGAGA AACTGAGCCCGTCGGAAATCAAGAAACTTGACTACGCCGGCCGGGACAGCCTGGAAGGGGAAATCAACCTCCTTTTCGAT CGTCACGACAGCCAGGTGAAGATGGTCCGCAGCCGTTACGAGGCCCGTATTGCCCGGCTGCAGAAGGGTGATGATCTGCC CCCCGGGGTGATCAGGATGGTCAAGGTTTACTTGGCCATCAAGCGCAAACTGGCGGTGGGCGACAAGATGGCTGGTCGCC ACGGCAACAAAGGTGTGGTCTCGCGGATTTTACCGGAAGAGGACATGCCCTACTTTGCCGACGGCACGGCGGTTGACATC GTGCTCAACCCGCTGGGCGTGCCTTCGCGGATGAACGTGGGACAGTTGCTGGAGATTCACCTGGGGCTGGCCGCCAAGAA ACTCGGTGAGCAGGTCCAGCGCCTGGCCCAGACCCGTGATCTTGCGGCGGTCAAGAAGAAGCTGGCGGCGGTGTACAGCA AAGAGGAATATGAGCAACTGCTGGCCGACCTGACTGATGATGATCTGCTGGAACTGGCCTCCCGCATGGGCAAAGGGCTG CATATGGCCACCCCGGTGTTCGACGGGGCCCAGGAGGAAGAGATCCGGCGTCTGCTGGTGGAGGCGGGCCTGGACGAGAT CGGCCAGCTCGATCTTTACGACGGCCTGACCGGCGAGAAGTTCGACAACCAGGTCACCGTCGGGTCCATGTATATGTTGA AGCTGCACCATCTGGTGGACGACAAAATCCACGCTCGCTCCACCGGTCCCTACTCGCTGGTCACTCAGCAGCCCCTGGGC GGTAAGGCCCAGTTCGGCGGCCAGCGGCTGGGTGAGATGGAAGTCTGGGCCATGGAGGCCTACGGGGCGGCTTACACCCT GCAGGAGTTCCTCACCGTCAAGTCCGACGACGTGGGTGGCCGGACCAAGATGTATGAGCGCATCGTCAAAGGCAACAACT TCCTGGAGGCGGGATTGCCCGAATCCTTCCACGTACTGGTCAAGGAACTGCAGGGGCTCTGCCTGGACATGGAGTTGCTG GATGAGCTGCCGCCGGTCCGAGAAAACGAAAAAGAGCAGTAA Protein sequence : MQMTRRIRKNFAKTRAIVEKPHLIEMQSRSYEKFLQMETPPDQRLDEGLQGIFKSVFPIKDFKDACSLEFVNYTFGEPKY TVEECIQRGLTFEVPVKMTVRLVTYDTDPDSGAQSIRDIKEQSVYLGSIPLMTKAGVFVINGTERVIVSQLQRSPGLFYT HDGGKTHAGGKLLYSARIIPVRGSWVDLEFDAKDILYVRIDRRRKFPVTTLLKTLGYGSEDLLRYFYQIESVSIEEGKLK KGFDPETMVGQRLPHDLISPADGEVLARKGRKVGKALARKIADAGITGLEIEAADLVGKVTASPVVNPETGEIMIPVNTE LSETMLEEISAAGVKNFDILLIDGIKVSDSFRKTLALDRVESREDALIEIYRRLRPSSPPTLEVAESFFNNLFFSPELYD LSVVGRFKLNARLGIDTDINIRTLTVEDIMLAVLHLVRLKDSQGPIDDIDHLGNRRVRTVGELVENQYRMGLVRMERAIK ERMSLQEVESLMPHDLINPKPITAAIKEFFGTSQLSQFMDQTNPLSEVTHKRRLSALGPGGLSRERAGFEVRDVHPTHYG RICPVETPEGPNIGLIVSLASYARVNEYGFIETPYRKVENRKVSNQIEYMTALDEEDQVIAPARSETDGKGKLVDGPLIA RQAGEVMISIADEVTYMDVSPNQLVSVGASLVPFLENDDANRALMGSNMQRQGVPLLRSEAPLVGTGLESAVAQDSGVCL LAGGDGVVEEVDANRIVVRYDEPGTDGFTTGIGIYRLEKYKKSNQNTCFTQRPLVEPGVRVKKGDILADGPACDHGELAL AKNVTVAFMPWRGYNYEDSILVNERLLKNDTYTSFHIEVFETVARDTKLGKEEVTRDIPNVSEEALRNLDESGIVRVGAE IKAGDILVGKITPKGETQLSPEEKLLRAIFGEKAGDVKDTSLRVPPGVEGVVVDAKVFSRKGVEKDERSLAIEEAEIKAL ERDLEDELNLLARSVRNGLADLLVGKKVKNAVKNRKGEELLAKDKKITREVLEKLSPSEIKKLDYAGRDSLEGEINLLFD RHDSQVKMVRSRYEARIARLQKGDDLPPGVIRMVKVYLAIKRKLAVGDKMAGRHGNKGVVSRILPEEDMPYFADGTAVDI VLNPLGVPSRMNVGQLLEIHLGLAAKKLGEQVQRLAQTRDLAAVKKKLAAVYSKEEYEQLLADLTDDDLLELASRMGKGL HMATPVFDGAQEEEIRRLLVEAGLDEIGQLDLYDGLTGEKFDNQVTVGSMYMLKLHHLVDDKIHARSTGPYSLVTQQPLG GKAQFGGQRLGEMEVWAMEAYGAAYTLQEFLTVKSDDVGGRTKMYERIVKGNNFLEAGLPESFHVLVKELQGLCLDMELL DELPPVRENEKEQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 55 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 55 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| DaAHT2_1459 | YP_003690773.1 | DNA-directed RNA polymerase, beta subunit | NC_002516.2.881699.p | Protein | 0.0 | 56 |
| DaAHT2_1459 | YP_003690773.1 | DNA-directed RNA polymerase, beta subunit | NC_010611.6233925.p0 | Protein | 0.0 | 55 |
| DaAHT2_1459 | YP_003690773.1 | DNA-directed RNA polymerase, beta subunit | NC_011595.7060572.p0 | Protein | 0.0 | 55 |
| DaAHT2_1459 | YP_003690773.1 | DNA-directed RNA polymerase, beta subunit | NC_010410.6003841.p0 | Protein | 0.0 | 55 |
| DaAHT2_1459 | YP_003690773.1 | DNA-directed RNA polymerase, beta subunit | NC_011586.7046027.p0 | Protein | 0.0 | 55 |
| DaAHT2_1459 | YP_003690773.1 | DNA-directed RNA polymerase, beta subunit | NC_010400.5987325.p0 | Protein | 0.0 | 55 |
| DaAHT2_1459 | YP_003690773.1 | DNA-directed RNA polymerase, beta subunit | CP000675.2.gene392.p | Protein | 0.0 | 55 |
| DaAHT2_1459 | YP_003690773.1 | DNA-directed RNA polymerase, beta subunit | NC_009085.4918494.p0 | Protein | 0.0 | 54 |
| DaAHT2_1459 | YP_003690773.1 | DNA-directed RNA polymerase, beta subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 54 |
| DaAHT2_1459 | YP_003690773.1 | DNA-directed RNA polymerase, beta subunit | NC_011035.1.6448762. | Protein | 0.0 | 54 |
| DaAHT2_1459 | YP_003690773.1 | DNA-directed RNA polymerase, beta subunit | NC_008702.1.4609796. | Protein | 0.0 | 54 |
| DaAHT2_1459 | YP_003690773.1 | DNA-directed RNA polymerase, beta subunit | CP004022.1.gene2794. | Protein | 0.0 | 53 |
| DaAHT2_1459 | YP_003690773.1 | DNA-directed RNA polymerase, beta subunit | CP001918.1.gene250.p | Protein | 0.0 | 53 |
| DaAHT2_1459 | YP_003690773.1 | DNA-directed RNA polymerase, beta subunit | CP001138.1.gene4362. | Protein | 0.0 | 53 |
| DaAHT2_1459 | YP_003690773.1 | DNA-directed RNA polymerase, beta subunit | NC_002695.1.914942.p | Protein | 0.0 | 53 |
| DaAHT2_1459 | YP_003690773.1 | DNA-directed RNA polymerase, beta subunit | CP000034.1.gene3741. | Protein | 0.0 | 53 |
| DaAHT2_1459 | YP_003690773.1 | DNA-directed RNA polymerase, beta subunit | CP000647.1.gene4402. | Protein | 0.0 | 53 |
| DaAHT2_1459 | YP_003690773.1 | DNA-directed RNA polymerase, beta subunit | CP001581.1.gene3846. | Protein | 0.0 | 47 |
| DaAHT2_1459 | YP_003690773.1 | DNA-directed RNA polymerase, beta subunit | AM180355.1.gene120.p | Protein | 0.0 | 46 |
