Gene Information

Name : Slip_0092 (Slip_0092)
Accession : YP_003701457.1
Strain : Syntrophothermus lipocalidus DSM 12680
Genome accession: NC_014220
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 97503 - 98201 bp
Length : 699 bp
Strand : -
Note : COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: cag:Cagg_0009 ABC transporter; PFAM: ABC transporter; SMART: ATPase AAA; SPTR: B8GBL5 ABC transporter; PFAM: ABC transporter

DNA sequence : 
GTGACACAATCCGCTCCTTTGATACAGTGTCGGGGGCTGACCAAGGTCTACCCCTTGTCCGGTGTAGAAGTGATGGCTCT
TCGGGGCATTGACCTGGACATAGATAGGGGCGAAATGGTAGCCATCATGGGGCCTTCCGGCTCCGGCAAGAGCACCCTGC
TCAACATACTGGGGGGCATGGACCGCCAAACCAGCGGCACCTACATCTTGGAAGGGGTCGAGGTCAACCAACTGGATGAC
CGGGAACTCTCTATCCTGCGTAATAAACGGCTGGGCGTCGTCTTCCAGCGCTACAACCTGTTGGCCCGATCCACGGCGCT
CGAAAACGTAAAGCTGCCCTTATATTATGCCGGCCACGACTCCGCCACCGCCGAGAAAATCGCCATGGAAATGCTGGACA
CCCTGGGCATATCCGAGTTGGCCTCCCACCGTCCCAACCAGATGTCAGGCGGGCAGCAGCAGAGGGTAGCCATAGCCAGG
GCCCTGGTCAACCAACCGGCAGTTCTTTTGGCCGACGAACCCACAGGAGCCCTGGATTCGGTCACCAGCGAAGAGATAAT
GCGGCTTTTCCAAGAGGTAAACCGCATGCACGGAGTAACTGTCGTCGTCATAACCCACGAAGCCAACATCGCCCAGTTCT
GCGATCGCCAGGTATCGATGCGGGACGGCTTGATCGTCTGCGACAGCAAATATATGTAA

Protein sequence : 
MTQSAPLIQCRGLTKVYPLSGVEVMALRGIDLDIDRGEMVAIMGPSGSGKSTLLNILGGMDRQTSGTYILEGVEVNQLDD
RELSILRNKRLGVVFQRYNLLARSTALENVKLPLYYAGHDSATAEKIAMEMLDTLGISELASHRPNQMSGGQQQRVAIAR
ALVNQPAVLLADEPTGALDSVTSEEIMRLFQEVNRMHGVTVVVITHEANIAQFCDRQVSMRDGLIVCDSKYM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 1e-30 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slip_0092 YP_003701457.1 ABC transporter NC_012469.1.7686878. Protein 8e-50 50
Slip_0092 YP_003701457.1 ABC transporter NC_008702.1.4606598. Protein 3e-38 47
Slip_0092 YP_003701457.1 ABC transporter CP001581.1.gene598.p Protein 3e-36 42
Slip_0092 YP_003701457.1 ABC transporter CP001581.1.gene798.p Protein 2e-36 41