Gene Information

Name : Slip_1527 (Slip_1527)
Accession : YP_003702855.1
Strain : Syntrophothermus lipocalidus DSM 12680
Genome accession: NC_014220
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1581784 - 1582500 bp
Length : 717 bp
Strand : +
Note : COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: rfr:Rfer_1942 ABC transporter; PFAM: ABC transporter; SMART: ATPase AAA; SPTR: Q21X35 ABC transporter; PFAM: ABC transporter

DNA sequence : 
TTGATCGACACCAATACCAGGGTCTATCACCTGGAAAATGTCTCCCGGCTTTACGAGATGGGCGAGGTTGAAGTCCGGGC
CCTCGATCGAGTAGATCTAGACGTTTTTAAAGGGGAGTTCACAGTTGTCCTTGGCCCTAGCGGCTCAGGTAAAAGCACGT
TGCTAAATCTGCTGGGCGGGCTCGACCGCCCTACCCATGGCCGTGTCCTTTTCTACGACCAAGACTTAAACGAGCTATCA
GACAACGAACTGGCTAAGTTTCGGCGTGATAAAGTCGGTTTCGTGTTCCAGTTTTTTAACCTGGTTCCTACTCTGACCGC
GCTTGAAAACGTAGAATTGGCAGCAGCCATTGCGGGACTAAAAGGAGACGCCAAAAAATACCTGGACCTGGTCGGGTTGG
GACCCCGGGCCGATAGCTTTCCTTCTAGACTGTCGGGAGGTGAACAGCAAAGGGTAGCCATAGCCCGGGCTTTAGTTAAG
GAGCCGGAGATAATTCTCTGTGATGAACCGACTGGAGCCCTGGATTACGAAACCGGGATCGTGGTGCTAAGAGTGCTGGC
TGATATCAACCGCCAAGTTGGGCATAACGTCATGGTCATAACCCATAACGCGGCCATAGCAGCCATGGCCGACAGGGTTG
TTTTCCTCCGCAGCGGAAGAATCGACCGGGTTGAGGTCAACTCTTCCCCAGTCGAGCCGGAAGAGGTGAAATGGTAA

Protein sequence : 
MIDTNTRVYHLENVSRLYEMGEVEVRALDRVDLDVFKGEFTVVLGPSGSGKSTLLNLLGGLDRPTHGRVLFYDQDLNELS
DNELAKFRRDKVGFVFQFFNLVPTLTALENVELAAAIAGLKGDAKKYLDLVGLGPRADSFPSRLSGGEQQRVAIARALVK
EPEIILCDEPTGALDYETGIVVLRVLADINRQVGHNVMVITHNAAIAAMADRVVFLRSGRIDRVEVNSSPVEPEEVKW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-33 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-33 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-33 45
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-32 44
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 3e-25 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slip_1527 YP_003702855.1 ABC transporter NC_012469.1.7685735. Protein 2e-47 50
Slip_1527 YP_003702855.1 ABC transporter NC_012469.1.7686878. Protein 4e-41 47
Slip_1527 YP_003702855.1 ABC transporter NC_008702.1.4606598. Protein 6e-33 46
Slip_1527 YP_003702855.1 ABC transporter CP001581.1.gene798.p Protein 1e-36 43
Slip_1527 YP_003702855.1 ABC transporter CP001581.1.gene598.p Protein 2e-38 42