Gene Information

Name : Trad_2088 (Trad_2088)
Accession : YP_003705745.1
Strain : Truepera radiovictrix DSM 17093
Genome accession: NC_014221
Putative virulence/resistance : Unknown
Product : cold-shock DNA-binding domain-containing protein
Function : -
COG functional category : K : Transcription
COG ID : COG1278
EC number : -
Position : 2260709 - 2260948 bp
Length : 240 bp
Strand : +
Note : COGs: COG1278 Cold shock protein; InterProIPR011129:IPR016027:IPR012156:IPR012340:IPR 002059:IPR019844; KEGG: dra:DR_0907 CSD family cold shock protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; SPTR: Q9RVW4 Cold shock protein, CSD

DNA sequence :
ATGGCAACAGGCAGAGTGAAGTGGTTCAGCAACGAAAAAGGCTTCGGCTTTATCGAACAAGACGACGGTGGCGCGGACGT
GTTCTGCCACTTTTCGGCGATTACCGGTAGCGGCTACCGCAGCCTCAACGAGGGCGACGAAGTCGAATTCGAGGTTGAAC
AGGGTCAAAAGGGGCTCCAGGCGAAAAACGTGACGGTGACAAACGCCGCCCCCGCCCCGCAGCGCGGCGCGCGCTACTAA

Protein sequence :
MATGRVKWFSNEKGFGFIEQDDGGADVFCHFSAITGSGYRSLNEGDEVEFEVEQGQKGLQAKNVTVTNAAPAPQRGARY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAO18076.1 unknown Not tested TTSS locus Protein 2e-14 57