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Name : lysS (wcw_1360) Accession : YP_003709717.1 Strain : Waddlia chondrophila WSU 86-1044 Genome accession: NC_014225 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1449832 - 1451409 bp Length : 1578 bp Strand : + Note : Lysyl-tRNA synthetase (class II) DNA sequence : ATGACAATTAAGCCCGATTTTGAAAAACTGGAAGAATACCAAAACCGCCTACGCAAGTTAAATGAAATTAAAAAGTTGGG GATCACTCCCTATCCTGCTAAATTCACACCATCTCATCACGCGTCAAAAATGCATCAGGAATACGATGGGCAACAGATCG GCCACAGTGAAGACGCTGCGGCAGGAGAAACGCCTTCGGTGACAGTATCTGGAAGACTGGTGCTGTTTCGCGCTATGGGA AAAAACGCGTTCGCCCAGATTCAGGATCACACGGGTCGGATCCAAGTGATGTTCAACCGCGACCAGACTGCGCTAGAGGG ATACCACTCCGAAAATCCAAACGATTCGAAACCGATCAAATTAATCGAAAAAAAATTTGATCTTGGAGACATCATCGGCA TAGAAGGCAATCTTTTCTTTACTCAGAAGGGAGAATTGACCATTTATGCCAAAAAAGTGACCCTTCTTTGCAAAACCTTG CTTCCGCTTGCCGACAAGCATTCCGGCTTAGCTGACAAAGAAACTCGCTACCGCAAACGCTGGCTTGACCTGATTACGCA TGAAGAAGTTCGCTCGACGTTTAGGAAGAGAAGCAAAATTTTGAGCATGATTCGGCGTTTTTTTGAAAATCAAGACTTTA TTGAAGTGGAAACACCTGTTTTGCAGAGCATTTACGGTGGGGCGGAAGCACGTCCATTCGTGACAAAACTCAACGCGCTT GATCAGGAAATGTATATGCGGATCAGCTTGGAAATCCCTCTAAAAAAGCTAATCGTTGGTGGGATGGACAAAGTCTTTGA GATCGGTCGCGTATTCAGAAATGAAGGAATCGACCGCACCCATAATCCGGAATTTACCCTACTCGAAGCATACGCTGCAC ACTGGGATTACAATGACATGATGCGGACAATGGAGAATCTAGTGGAAAAGCTAGCTCTTGAGCTCCACGGAACGACTCTC TTGAAAGTTACTGATCCGGAATCCGGAAAGGAAGCTGAAATTGACGTCAAGGCGCCGTGGAAACGGATGACAATGAAAGA GAGCATCAACACTTACGCAAATATCGATGTCGATGCGCTGTCCGATGAAGAGCTTTACAAACTTGTTCTGGAGTGCAGCC ACCTGGAAGCAAAAAAAATTAAGACCTTCCCACGCGGCCTCATGATCAACGCTCTTTTCGAACATAAGGTCGAACCTCAT CTGATTCAGCCTCACCATATCACTGACTTCCCTATTGAAACCACCCCTCTTTGCAAACCACATCGAGATCCAGCGGAAAG AGAGAAGGGGATTGTCGAGCGCTTCGAAAGCTTTATCATGGGAGGCGAGTTCAGCAATGCCTATACAGAACTCAATGATC CTGTGATTCAGTATCAACTACTTGCGGAGCAGGCTGCACGCAAAGCAACCGGAGACGAAGAGGCAAACCCTTTCGATCAT GAATTTGTCGAAGCAATTTGCCAAGGAATGCCTCCAACAGGAGGAATTGGGATTGGTATCGATCGCTTGGTCATGCTATT GACCCATTCTACCTCCATTAGAGATGTTCTCTTCTTTCCCTGGATGAAACCACAATAA Protein sequence : MTIKPDFEKLEEYQNRLRKLNEIKKLGITPYPAKFTPSHHASKMHQEYDGQQIGHSEDAAAGETPSVTVSGRLVLFRAMG KNAFAQIQDHTGRIQVMFNRDQTALEGYHSENPNDSKPIKLIEKKFDLGDIIGIEGNLFFTQKGELTIYAKKVTLLCKTL LPLADKHSGLADKETRYRKRWLDLITHEEVRSTFRKRSKILSMIRRFFENQDFIEVETPVLQSIYGGAEARPFVTKLNAL DQEMYMRISLEIPLKKLIVGGMDKVFEIGRVFRNEGIDRTHNPEFTLLEAYAAHWDYNDMMRTMENLVEKLALELHGTTL LKVTDPESGKEAEIDVKAPWKRMTMKESINTYANIDVDALSDEELYKLVLECSHLEAKKIKTFPRGLMINALFEHKVEPH LIQPHHITDFPIETTPLCKPHRDPAEREKGIVERFESFIMGGEFSNAYTELNDPVIQYQLLAEQAARKATGDEEANPFDH EFVEAICQGMPPTGGIGIGIDRLVMLLTHSTSIRDVLFFPWMKPQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 3e-76 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_003709717.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-76 | 41 |
