Gene Information

Name : EbC_05930 (EbC_05930)
Accession : YP_003739984.1
Strain : Erwinia billingiae Eb661
Genome accession: NC_014306
Putative virulence/resistance : Virulence
Product : type VI secretion system, VCA0110 family
Function : -
COG functional category : S : Function unknown
COG ID : COG3519
EC number : -
Position : 697572 - 699449 bp
Length : 1878 bp
Strand : +
Note : silverDB:661Eb00794

DNA sequence :
ATGGACAGTAAACTGCTCGATTATTACAACCGTGAACTGGCGTACCTGCGCGAAATGGGGGCGGAGTTTGCCGAACGCTA
CCCAAAAGTCGCCGGACGGCTGGGGATGCGCGGGATTGACGTCGCCGATCCGTATGTCGAGCGGCTGATGGAAGGCTTTG
CCTTTCTGACCTCCCGCGTGCAGTTAAAAATGGATGCCGAGTTCCCGCGTTTCTCCCAGCGGATGCTGGAGATGATTGCG
CCAAACTACCTGGCCCCTACGCCGTCGATGGCGATTGCGGAGCTGCATCCGGACAGCCAGAAAGGCGACATCAGCGGCGG
CTTTCGCGTCCCGCGCGGCACGATGATGGACAGCCAGACGCTGAAGAAAAGCGGCGTCACCTGCAGCTACAGCACCGCCC
ACGATGTGATGCTACAACCGCTGACCATCACCAGCGTCGAGCTGGGCGGCGTGCCGGCGGATATCCCGCTGGGGCCGATG
GGCCTCAGCCAGCGCGGAGCCGCCAGCGCGCTACGCATCCGCCTGACCTGTTTCAACGACGTAACCCTGAACACCCTGAC
CTTTGACGATCTGATGTTCTTCCTCAGCGGCCCGGATATTCAGGCGCAAAAGCTGCTTGAGCTGATTATGCAACACACGG
TGGGCAGCTTCTGTCAGACGGTGGAAGCGCAGCCGCAGCGGGTGGTGATGAACGATGAGGCGCTGACCCAGGAAGGATTT
TCGCCTGACCAGGCCTTGCTGCCGGACGATCTGCGCAACTTCGACGGCTACCGGCTGTTGCAGGAGTACTTTGCTTTTCC
GGCCCGTTTCCAGTTCATCAACATCAGCCAGCTGCGCGGCATTCTCGGCAAGTGCGGCCCGGATGTTAAAGCGTTTGAGA
TCGTGCTGCTGCTGGATAAAGCCGACGCGGCGCTGGAAAGGGTGATCGATAAAAGCCATCTGTCGCTGCACTGCACGCCG
GTGATCAACCTGTTCCCGAAGACGGCCGAGCGGCAAAAAATCAGCGACAGCGTGCATGAATATCATCTGGTGGTCGACAA
TATTCGCCCGCTGGATTACGAGATTTACTCGGTTCAAAAGCTGTATGCCACCGGCGATAAGCGCCGTGACGAACAGGTTT
TCCGCCCGTTCTGGAGCACCTTCAGCCAGGACCACGGGGATTACGGTGCCTATTTCTCGCTTCGCCGCGAACAGCGCACG
CTGTCTGAGCGCGCGCAGCGTTACGGCACGCGGACCGGCTATGTCGGCTCGGAAGTTTTCCTGTCGCTGGTGGATGAACG
TCATTCCCCGTGGAGCGATGATCTGCGCCATCTGACCGCCGACGTGCTGTGCACCAGCCGCGATCTGCCGCTGATGCTGC
TGCAACAGGATCAGGGCAACTTCCTGATGCCGGACTCGATTCCGGTCGGTCAGTTAACGCTGAAGAAAGGGCCAACGCCA
CCGCGTCCGGCGCTGGCCGAAGGGCTGACGACCTGGCGCTTGATCAGCCATCTGCAAATGAACTACCTCAGCCTGATGGA
CAGTGATGAGGGACAGGGCGCTGCCGCGCTGCGTCAGCTGCTGGGGCTGTATGCCAATCTGGCGGAAGCGCCGGTGGCGA
GGCAGATCGAAGGCATCCGCCACTGTCAGTTAAAGCCGGTGTATCGCCGGGTGCCGGAACCTGGTCCGATCGTCTTCGCG
CGGGGCGTGGGCATCGAACTGAGCGTGGATGAACAGGCGTTCTCCGGTTCAAGCCCGTGGTTACTGGGCAGCGTGCTGGA
GCGGGTCTTTTCGCGGCTGGTGGCGATGAACAGCTTTACCGAAGTGACGCTGATCAGTCAGCAGCGCGGTGAAGTGGGTT
ACTGGTCGCCAAGGATGGGCAAAAGGGCGCTGATATGA

Protein sequence :
MDSKLLDYYNRELAYLREMGAEFAERYPKVAGRLGMRGIDVADPYVERLMEGFAFLTSRVQLKMDAEFPRFSQRMLEMIA
PNYLAPTPSMAIAELHPDSQKGDISGGFRVPRGTMMDSQTLKKSGVTCSYSTAHDVMLQPLTITSVELGGVPADIPLGPM
GLSQRGAASALRIRLTCFNDVTLNTLTFDDLMFFLSGPDIQAQKLLELIMQHTVGSFCQTVEAQPQRVVMNDEALTQEGF
SPDQALLPDDLRNFDGYRLLQEYFAFPARFQFINISQLRGILGKCGPDVKAFEIVLLLDKADAALERVIDKSHLSLHCTP
VINLFPKTAERQKISDSVHEYHLVVDNIRPLDYEIYSVQKLYATGDKRRDEQVFRPFWSTFSQDHGDYGAYFSLRREQRT
LSERAQRYGTRTGYVGSEVFLSLVDERHSPWSDDLRHLTADVLCTSRDLPLMLLQQDQGNFLMPDSIPVGQLTLKKGPTP
PRPALAEGLTTWRLISHLQMNYLSLMDSDEGQGAAALRQLLGLYANLAEAPVARQIEGIRHCQLKPVYRRVPEPGPIVFA
RGVGIELSVDEQAFSGSSPWLLGSVLERVFSRLVAMNSFTEVTLISQQRGEVGYWSPRMGKRALI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0289 NP_454871.1 hypothetical protein Not tested SPI-6 Protein 6e-123 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EbC_05930 YP_003739984.1 type VI secretion system, VCA0110 family VFG2074 Protein 3e-126 45