|
Name : secD (RCFBP_10735) Accession : YP_003744682.1 Strain : Ralstonia solanacearum CFBP2957 Genome accession: NC_014307 Putative virulence/resistance : Unknown Product : sec/yeg protein translocase auxillary subunit Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 770560 - 772443 bp Length : 1884 bp Strand : - Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 9305629; Product type t : transporter DNA sequence : ATGAACCGTTATCCGCTGTGGAAATACCTTGTGATCCTGGTGGCGCTCGCCATCGGGTTCCTCTATACGCTGCCGAACTT CTTCGGTGAAGCGCCCGCCGTCCAGGTGTCGTCGGGCAAGGCTACCGTCAGGGTCGACCTGGCGACGCAAAAGCAGGTCG AAGACCTCCTCGCCGCCGCCAACCTGACGCCGAACGGCGTGTTCTTCGACCAGAACGGCACCTCGGGCAGCGTGCGCGTG CGCTTCGCCGACACCGACACGCAGCTCAAGGCCAAGGACGTCCTGGCACGCGGCCTGAACAGCGACCCGAGCGACCCGAC CCACATCGTCGCGCTGAACCTGCTGTCGGGTTCGCCGCGCTGGCTGACCGCCATCCACGCCCTGCCGATGTTCCTCGGCC TGGACCTGCGCGGCGGCGTGCACTTCTTGCTGCAGGTCGACATGAACGGCGCGCTGACCAAGAAGCTCGACTCGCTGGCC GGCGACATCCGCACCCAGCTGCGCGACAAGGGCGTGCGCCACAACGGCATCGAGCGCAGCGGCACGACCATCAGCATCAA GTTCAGCAATCCCGACGAGGCCGAGCGCGCCCGCGGCCTGCTGGCCGACAGCACCCGCGAGCTGACCTTCGCGTCCGACA AGACCGCCGACGGCGTCACGCTCACCGGCACCTTCACCGCTGCGGCGATGAAGGAAGTCCAGGACAACGCCGTCAAGCAG AACGTCGTCACGCTGCACAATCGCGTCAACGAACTGGGCGTGTCCGAGCCGGTGATCCAGCAGCAGGGCCCGGACCGCAT CGTGGTGCAATTGCCCGGCGTGCAGGACACCGCCAAGGCCAAGGACATCATCGGCCGCACCGCCACGCTGGAAGCCCGCA TGGCCGACCCGAATGCCACCGGCATTCCGCGCCTGACCGATCCCGTGCCGCTGGGCGACGAGCTGTTCACCCAGGGCCGC GGCGCACCGGTGCTGCTGCAGAAGCAGGTGATCTTCACCGGCGACCGCATCAACAGCGCCTCGGCCGGCTTCGACCAGAA CCACAACCCGTCGGTCGACATCACGCTCGACGGCCAGGGCGGCCGCATGCTGCGCGACATCTCGCGCGACAACATCGGCA AGCGCATGGCCATCGTGCTGTTCGAGAAGGGCAAGGGCGAGGTGCTGACCGTCGCCACCATCCAGTCCGAACTCGGCTCG CGCTTCCAGATCACCGGCATCGGCTCGGTGGAATCCGCCTCCGACCTGGCGCTGCTGCTGCGCGCCGGCTCCCTGGCCGC GCCGATGGAGATCATCGAAGAGCGCACCATCGGCCCGTCGCTGGGCGCCGACAACATCAAGAAGGGCTTCGATTCCGCCG CGTACGGCTTCGCCGCCATCTCGGTGTTCATGGTGCTGTACTACATGCTGTTCGGCGCGTTCTCGGTGGTGTCGCTGGGC GTGAACGTGTTCCTGCTGATCGCCATCCTGTCGATGCTGCAGGCCACCCTCACCCTGCCCGGCATCGCGGCCATCGCGCT GGCGCTGGGCATGGCGATCGATGCCAACGTGCTGATCAACGAGCGCATCCGCGAAGAACTGCGCAACGGCGCCTCGCCGC AGATGGCGATCGCCGCCGGCTTCGAGCGCGCCTGGGCGACCATCCTGGACTCGAACGTGACCACGCTGATCGCCGGCCTG GCGCTGCTGGCCTTCGGCTCGGGCCCGGTGCGCGGCTTTGCCGTGGTGCACTGCCTGGGCATCCTCACGTCGATGTTCTC GGCGGTGTTCTTCAACCGCAGCCTGGTCAACCTCTGGTACGGCCGCAAGAAGAAGCTGCAGGGCCTCGCCATCGGCCAGG TGTGGAAACCCGCCGGCACCACCGAAAGTCCGGCCAAGCAGTAA Protein sequence : MNRYPLWKYLVILVALAIGFLYTLPNFFGEAPAVQVSSGKATVRVDLATQKQVEDLLAAANLTPNGVFFDQNGTSGSVRV RFADTDTQLKAKDVLARGLNSDPSDPTHIVALNLLSGSPRWLTAIHALPMFLGLDLRGGVHFLLQVDMNGALTKKLDSLA GDIRTQLRDKGVRHNGIERSGTTISIKFSNPDEAERARGLLADSTRELTFASDKTADGVTLTGTFTAAAMKEVQDNAVKQ NVVTLHNRVNELGVSEPVIQQQGPDRIVVQLPGVQDTAKAKDIIGRTATLEARMADPNATGIPRLTDPVPLGDELFTQGR GAPVLLQKQVIFTGDRINSASAGFDQNHNPSVDITLDGQGGRMLRDISRDNIGKRMAIVLFEKGKGEVLTVATIQSELGS RFQITGIGSVESASDLALLLRAGSLAAPMEIIEERTIGPSLGADNIKKGFDSAAYGFAAISVFMVLYYMLFGAFSVVSLG VNVFLLIAILSMLQATLTLPGIAAIALALGMAIDANVLINERIREELRNGASPQMAIAAGFERAWATILDSNVTTLIAGL ALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKKKLQGLAIGQVWKPAGTTESPAKQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 4e-100 | 43 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 4e-100 | 43 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 4e-100 | 43 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 2e-100 | 43 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 5e-100 | 43 |
