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Name : rpoB (RPSI07_0463) Accession : YP_003751140.1 Strain : Ralstonia solanacearum PSI07 Genome accession: NC_014311 Putative virulence/resistance : Unknown Product : RNA polymerase, beta subunit Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 452002 - 456108 bp Length : 4107 bp Strand : + Note : Evidence 2b : Function of strongly homologous gene; PubMedId : 10834976, 6266829, 9893021; Product type e : enzyme DNA sequence : ATGGCGTACAGCTTTACCGAGAAAAAGCGTATTCGCAAGAGTTTCGCGAAGCGCGCAACGGTCCATCAGGTTCCCTTCCT GCTTGCCACCCAGATTCAATCGTATGCCCAGTTCTTGCAGGAGAACGCGCCTATCGCGCAACGCAAGAGCGAAGGTCTGC AAGCGGCGTTCAACGCCATCTTCCCCATCGTGTCGCACAACGGTCTGGCACGCATGGAGTTTGTCTCGTACCACCTGTCC AACCCGCCGTTCGACGTCAAGGAATGTCAGCAGCGCGGCCTGACCTTCCACTCGGCACTGCGCGCGAAAGTGCGCCTGAT CATCAACGACCGCGAGAACCCGACCAAGGTCAAGGAGATCAAGGAACAGGAAGTCTACATGGGCGAGATTCCGCTCATGA CGTCCACCGGTTCGTTCGTGATCAACGGCACGGAACGCGTGATCGTGTCCCAGCTGCACCGCTCGCCGGGCGTGTTCTTC GAGCACGACAAGGGCAAGACGCACAGCTCGGGCAAGCTGCTGTTCTCGGCGCGCATCATTCCCTACCGCGGCTCGTGGCT GGACTTCGAATTCGATCCGAAGGACATCCTGTATTTCCGCGTCGACCGCCGCCGCAAGATGCCGGTGACGATCCTGCTGA AGTCGATCGGCCTGACGCCGGAACAGATCCTGGCGCACTTCTTTGTCTTCGACAACTTCACGCTCAAGACCGACGGCGCG CTGATGGAGTTCGTGCCCGAGCGCCTGCGCGGTGAAGTCGCGCGCTTCGACATCAGCGACAAGAACGGCAAGGTCGTCGT CGAGAAGGACAAGCGCATCAACGCCAAGCACATCCGTGACCTGGACGCCGCCGGCACCAAGCTGATCAGCGTGCCGGAAG ACTATCTGCTGGGTCGCGTGCTGGCGAAGAACATTGTCGACCCGGATACCGGCGAAGTGCTGGCCAACGCCAACGACGAG CTGACCGAGGGCGTGCTCGAGAAGCTGCGCGACGCGGGCGTGAAGGAAATCCAGACGCTGTACACCAACGATCTGGACCA GGGTCCGTACATGTCGCAGACGCTGCGCACGGACGACACGGTCGACCAGACCGCTGCCCGTATCGCGATCTACCGCATGA TGCGCCCGGGCGAGCCGCCGACCGAGGACGCCGTCGAAGCACTGTTCCAGCGCCTGTTCTACAGCGAAGACTCGTACGAC CTGTCGCGCGTGGGCCGCATGAAGGTCAACAGCCGCCTGAACCGCTCGGAGGGCACCGGCCCGATGGTGCTGACGGATGA CGACATCCTCGACACCATCAAGCTGCTGGTGAACCTGCGCAACGGCAAGGGCGAAGTGGACGACATCGACCACCTCGGCA ACCGTCGCGTGCGCTGCGTCGGCGAACTGGCGGAGAACCAGTTCCGCGCCGGCCTGTCGCGCGTTGAGCGCGCGGTCAAG GAACGCCTCGGCCAGGCCGAGACGGAAAACCTGATGCCGCACGACCTGATCAACTCGAAGCCGATCTCGTCGGCGATCCG CGAGTTCTTCGGTTCGTCGCAGCTGTCGCAGTTCATGGACCAGACCAACCCGCTGTCGGAAGTGACCCACAAGCGTCGTA TCTCGGCGCTGGGCCCGGGCGGTCTGACGCGCGAGCGCGCGGGCTTCGAAGTCCGCGACGTGCACCCGACCCACTACGGC CGCGTGTGCCCGATCGAAACGCCGGAAGGTCCGAACATCGGTCTGATCAACTCGCTGGCGCTGTACGCGCAACTGAACGA CTACGGCTTCCTGGAAACGCCGTATCGCAAGGTCGAGAACAGCAAGCTGACCGACCAGGTCGACTACCTGTCGGCCATCG AGGAAGGCAAGTACGTGGTGGCGCAGGCCAACGCGACGGTGGACAAGGACGGCAACCTGGTCGACGAACTGGTCTCCGCG CGTGAAGGCAGCGAGCGTGAAACCCGTATGGTCACGCCGGACCGTGTGCAGTACATCGACGTGGCGCCGTCGCAGATCGT ATCGGCTGCAGCCTCGCTGGTGCCGTTCCTCGAGCACGATGACGCGAACCGTGCACTGATGGGCGCAAACATGCAGCGTC AGGCCGTGCCTTGCCTGCGTGCGGACAAGCCGCTGGTCGGCACGGGCGTCGAGCGCACCGTGGCGGTCGACTCGGGTACT GCCGTGCAGGCGACCCGTGGCGGCCTGGTCGACTACGTCGACGCGAACCGCGTGGTGATCCGTGTGAACGATGACGAAGC GGTGGCCGGTGAGGTTGGCGTCGACATCTACAACCTGATCAAGTACACGCGTTCGAACCAGAACACGAACATCAACCAGC GTCCGATGGTCAAGGTGGGCGACATCGTTGCCCGCGGCGACGTGATTGCCGATGGTGCCTCGACCGACATGGGCGAGCTC GCGCTCGGCCAGAACATGCTGGTCGCGTTCATGCCCTGGAACGGCTACAACTTCGAGGATTCGATCCTGATCTCGGAGCG CGTCGTGGCGGAAGACCGCTACACTTCGATCCACATCGAGGAACTGTCGGTCGTCGCCCGCGACACCAAGCTCGGACCGG AAGAAATCACGCGCGACATCTCGAACCTGGCCGAAGCCCAACTGGCGCGCCTGGACGAGTCGGGCATCACGTACATCGGC GCGGAAGTCGAAGCCGGCGACGTGATGGTCGGCAAGGTCACGCCCAAGGGCGAGACCCAGCTGACGCCGGAAGAAAAGCT GCTGCGCGCGATCTTCGGCGAGAAGGCGTCCGACGTGAAGGACACCTCGCTGCGCGTGCCGTCGGGCATGAGCGGCACGG TGATCGACGTGCAGGTCTTCACGCGTGAAGGCGTGACGCGCGACAAGCGCGCCCAGTCGATCATCGACGAGGAGCTCAAG CGTTACCGCCTGGACCTGAACGACCAGCTGCGCATCGTGGAAGGCGACGCCTTCCAGCGTCTGGAGCGTCTGCTGTTGGG CAAGGTGGCTAACGGCGGTCCGAAGAAGCTGGCCAAGGGCACCGCGCTCACGAAGGAATACCTGGCCGATCTGGACAAGT GGCACTGGTTCGACATCCGCCCGGCGGATGACGATGTTGCCACCCAGCTGGAAGCCGTCAAGGAAGCCATCGAGCAGAAG CGCCACGACTTCGACCTCGCGTTCGAAGAGAAGCGCAAGAAGCTCACGCAGGGCGACGAACTGCCGCCGGGCGTGATCAA GATGGTCAAGGTGTACCTGGCCGTGAAGCGCCGCCTGCAGCCTGGCGACAAGATGGCCGGCCGTCACGGCAACAAGGGTG TGGTGTCGAAGATCACCCCGATCGAAGACATGCCCTACATGGCCGACGGCACGCCTGCCGACATCGTGCTGAACCCGCTG GGCGTGCCGTCGCGGATGAACGTGGGCCAGATTCTCGAAACCCACCTGGGCTGGGCCGCGCGTGGCCTGGGCGAGCGCAT CGGCAACATGCTCAAGGCACAGGCCAAGGCCGCCGAGATCCGCAAGCTGCTGGGGCAGATCTACAACGAAAGCGGCAAGG TGGAAGACCTCGACAGCCTGACCGACGCCGAAGTGCTGGAACTGGCCGAGAACCTGAAGAAGGGCGTGCCGTTCGCGACG CCGGTGTTCGACGGTGCGCATGAGGACGAAATCCGCCGCATGCTGGACCTCGCCTATCCGGAAGAGATCGCGAAGGAGAA GGGCCTGACCGCTTCCAAGCAGCAGGTCACGCTGTTCGACGGCCGCACCGGCGAAGCCTTTGAGCGTCCGGTCACGCTGG GCGTGATGCACATGCTGAAGCTGCACCACTTGGTCGACGACAAGATGCACGCGCGTTCGACCGGTCCGTACTCGCTGGTG ACGCAGCAGCCGCTGGGCGGTAAGGCCCAGTTCGGTGGCCAGCGTTTCGGTGAGATGGAAGTGTGGGCGCTGGAAGCCTA TGGCGCCTCCTACGTGCTGCAGGAAATGCTGACGGTCAAGTCGGACGACGTGAACGGCCGGACCAAGGTGTACGAGAACA TCGTCAAGGGCGAGCACTCGATCGATGCCGGCATGCCGGAATCGTTCAACGTGCTGGTCAAGGAAATCCGCTCGCTGGGT ATCGATATCGACCTCGAGCGCAACTGA Protein sequence : MAYSFTEKKRIRKSFAKRATVHQVPFLLATQIQSYAQFLQENAPIAQRKSEGLQAAFNAIFPIVSHNGLARMEFVSYHLS NPPFDVKECQQRGLTFHSALRAKVRLIINDRENPTKVKEIKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFF EHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKSIGLTPEQILAHFFVFDNFTLKTDGA LMEFVPERLRGEVARFDISDKNGKVVVEKDKRINAKHIRDLDAAGTKLISVPEDYLLGRVLAKNIVDPDTGEVLANANDE LTEGVLEKLRDAGVKEIQTLYTNDLDQGPYMSQTLRTDDTVDQTAARIAIYRMMRPGEPPTEDAVEALFQRLFYSEDSYD LSRVGRMKVNSRLNRSEGTGPMVLTDDDILDTIKLLVNLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRVERAVK ERLGQAETENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYG RVCPIETPEGPNIGLINSLALYAQLNDYGFLETPYRKVENSKLTDQVDYLSAIEEGKYVVAQANATVDKDGNLVDELVSA REGSERETRMVTPDRVQYIDVAPSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRADKPLVGTGVERTVAVDSGT AVQATRGGLVDYVDANRVVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPMVKVGDIVARGDVIADGASTDMGEL ALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYTSIHIEELSVVARDTKLGPEEITRDISNLAEAQLARLDESGITYIG AEVEAGDVMVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGVTRDKRAQSIIDEELK RYRLDLNDQLRIVEGDAFQRLERLLLGKVANGGPKKLAKGTALTKEYLADLDKWHWFDIRPADDDVATQLEAVKEAIEQK RHDFDLAFEEKRKKLTQGDELPPGVIKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSKITPIEDMPYMADGTPADIVLNPL GVPSRMNVGQILETHLGWAARGLGERIGNMLKAQAKAAEIRKLLGQIYNESGKVEDLDSLTDAEVLELAENLKKGVPFAT PVFDGAHEDEIRRMLDLAYPEEIAKEKGLTASKQQVTLFDGRTGEAFERPVTLGVMHMLKLHHLVDDKMHARSTGPYSLV TQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSDDVNGRTKVYENIVKGEHSIDAGMPESFNVLVKEIRSLG IDIDLERN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 66 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 66 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_003751140.1 | RNA polymerase, beta subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 81 |
| rpoB | YP_003751140.1 | RNA polymerase, beta subunit | NC_008702.1.4609796. | Protein | 0.0 | 77 |
| rpoB | YP_003751140.1 | RNA polymerase, beta subunit | NC_011035.1.6448762. | Protein | 0.0 | 74 |
| rpoB | YP_003751140.1 | RNA polymerase, beta subunit | NC_002516.2.881699.p | Protein | 0.0 | 68 |
| rpoB | YP_003751140.1 | RNA polymerase, beta subunit | CP000034.1.gene3741. | Protein | 0.0 | 66 |
| rpoB | YP_003751140.1 | RNA polymerase, beta subunit | CP001918.1.gene250.p | Protein | 0.0 | 66 |
| rpoB | YP_003751140.1 | RNA polymerase, beta subunit | CP001138.1.gene4362. | Protein | 0.0 | 66 |
| rpoB | YP_003751140.1 | RNA polymerase, beta subunit | NC_002695.1.914942.p | Protein | 0.0 | 66 |
| rpoB | YP_003751140.1 | RNA polymerase, beta subunit | CP000647.1.gene4402. | Protein | 0.0 | 66 |
| rpoB | YP_003751140.1 | RNA polymerase, beta subunit | NC_009085.4918494.p0 | Protein | 0.0 | 66 |
| rpoB | YP_003751140.1 | RNA polymerase, beta subunit | NC_010400.5987325.p0 | Protein | 0.0 | 66 |
| rpoB | YP_003751140.1 | RNA polymerase, beta subunit | NC_010611.6233925.p0 | Protein | 0.0 | 66 |
| rpoB | YP_003751140.1 | RNA polymerase, beta subunit | NC_011595.7060572.p0 | Protein | 0.0 | 66 |
| rpoB | YP_003751140.1 | RNA polymerase, beta subunit | NC_010410.6003841.p0 | Protein | 0.0 | 66 |
| rpoB | YP_003751140.1 | RNA polymerase, beta subunit | NC_011586.7046027.p0 | Protein | 0.0 | 66 |
| rpoB | YP_003751140.1 | RNA polymerase, beta subunit | CP004022.1.gene2794. | Protein | 0.0 | 65 |
| rpoB | YP_003751140.1 | RNA polymerase, beta subunit | CP000675.2.gene392.p | Protein | 0.0 | 65 |
| rpoB | YP_003751140.1 | RNA polymerase, beta subunit | AE016830.1.gene3155. | Protein | 0.0 | 46 |
| rpoB | YP_003751140.1 | RNA polymerase, beta subunit | CP001581.1.gene3846. | Protein | 0.0 | 45 |
