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Name : Nwat_2177 (Nwat_2177) Accession : YP_003761330.1 Strain : Nitrosococcus watsonii C-113 Genome accession: NC_014315 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 2372339 - 2376418 bp Length : 4080 bp Strand : - Note : TIGRFAM: DNA-directed RNA polymerase, beta subunit; KEGG: noc:Noc_2331 DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 2; DNA-directed RNA DNA sequence : ATGCCCTACTCGTTGACCGAGAAGAAGCGTATTCGTAAGGATTTTGGCAAGCTCCATAGTATACTGAAAACTCCTTTCTT GTTAACCATACAAATCGGCTCTTTCCTGGATTTTCTACAGATGGATGTGCCTCCTGGTAAGAGGAAAGATAAAGGGTTGC ATGCTGCATTTAAGAGCGTTTTTCCTATTAAGAGCTATACAGAGTATGCTGAGCTACAGTATAGCAGTTATCATCTTGGT GTTCCCTCATTCGAGGTTAAGGAGTGCCAAGTACGCGGTTTAACTTATGCGGCCCCTCTGCGGGTTAAGTTGCGTCTTGT TATTTATGACAAAGAATCTCCTGCTAGCGAACAAGTAGTCAAGGATGTAAAAGAGCAGGAAGTATATATGGGCGAGATCC CCTTGATGACGCCAAAAGGGAATTTTGTTATTAATGGCACGGAGCGAGTTATCGTCTCTCAATTACATCGTTCTCCAGGG GTTATCTTTGAGCATGATAAGGGAAAGACCCATTCTTCAGGAAAGTTACTTTTTTCTGCTAGGATAATCCCCTATCGGGG ATCTTGGCTCGATTTTGAATTCGATCCTAAGGATTGCATTTATGCCCGTATTGATCGTCGGCGTAAATTGCTAGCGACTA TATTGTTACGCGCCCTCGGTTACAGCACCGAGGAAATTCTAATTATGTTCTTTGAAACGATTTCGGTTAAGCGCCAAGGT TCAAGCTATTTATTAGACTTGGTACCTCAGCGACTTCGGGGTGAGTCACTGCCTTTCGATATCGCTAGCCCAGATGGTGA AGTCATCGTTGAAGCTGGGCGGAGGGTTACGGCGCGCCATATCAAGCAGATGGAAAAGGCTGGAATGAAGACTTTATCCG TGCCTAAGGAGTTTTTAATAGGAAAAATTCTAACTCGGGATCTGATTGATACTGGTACCGGAGAAGTATTGGCTAAAGCG AATGATGAAATTACAGCGGAATTACTAGCGGTTATAGAAAACACTGATATACAAGCCTTTGATCTCATTTATACCAACGA TTTGGACCGAGGTTCCTTTATCTCCGATAGTTTACGCTTAGATCCCACTACCACACCGCTAGAAGCCCAGATGGAAATCT ATCGTGTAATGCGCCCTGGGGAACCGCCGACTAAGGAAGCAGCACAGAATTTGTTTCAAAATCTGTTTTTCAACCCAGAA CGTTACGATCTCTCTCCGGTGGGTCGAATGAAATTTAATCGCCGTCTGGGGAAAGAAGATATTACCGGCCCAAGTATATT ATCCAAAGAAGATATTGTCGATGTTATAAAGACCTTAGTTGATATCCGTAATGGTTACGGTAGTGTGGATGATGTTGACC ATCTGGGCAATCGCCGGGTGCGCAGTGTTGGAGAAATGGCGGAAAATCAGTTTCGCGTAGGCTTGGTGCGAGTCGAGCGG GCGGTACGGGAGCGTTTGAGTTTAGCCGAGTCGGAGGGGTTAATGCCCCAGGAATTGATTAACGCGAAACCCGTATCGGC AGCGATTAAGGAGTTTTTTGGCTCTAGCCAGCTATCACAGTTTATGGATCAGAACAATCCTTTATCAGAGGTGACTCATA AACGACGGGTATCTGCACTAGGGCCAGGAGGATTAACTCGTGAGCGGGCTGGTTTTGAGGTACGTGATGTACATCCTACT CATTACGGGCGCGTCTGCCCCATCGAGACTCCGGAAGGTCCAAATATTGGTTTAATTAATTCCTTAGCGGTTTATGCCCG AATTAATCAATATGGTTTTATTGAAACACCATATCGAAAAGTAGTGGATGGCAGGGTGACTGCCGAAGTGGATTATCTTT CGGCCATTGAAGAAGGGCAGTATGTAATTGCTCAGGCGAATGCGGCTGCGGATGAGGAGGGACGCCTCATTGATATGTTA GTTTCTTGTCGTCACAAGAATGAATTTACTCTTCTGCCGCCTGAAAAAGTGCAGTACATTGATGTATCACCTAAACAGAT CGTATCGGTAGCGGCATCTTTAATTCCTTTTTTAGAGCACGATGATGCCAACCGTGCATTGATGGGATCTAACATGCAGC GCCAGGCAGTGCCTACCTTGCGGGCGGAAACCCCTTTAGTAGGTACTGGTATGGAGCAATTCGTAGCTCGTGATTCAGGC GTGATGGTGGTTGCTCGCCGTGGGGGTATCGTGGATTCTGTGGATGCAGCCCGGGTTGTCGTGCGAGTTAATGACGAAGA GACGGCTTCCGATGAACCGGGGGTTGATATTTATAATCTCATTAAATACGCCCGCTCGAATCAAAACACCTGTATTAATC AGAGTCCGTTAGTAAAGCCAGGCGATACGGTAGCTATAGGTGATGTGTTGGCTGATGGTCCTTCGACAGATATGGGCGAA TTAGCTTTGGGGCAGAATCTGCTCGTTGCCTTTATGCCTTGGAATGGCTATAACTTCGAGGATTCTATCCTTATTTCCGA GCGAGTGGTGGAAGAAGATCGTTTTACCTCCATTCATATTGAAGAACTGACTTGCTTTGCTCGAGATACTAAGTTAGGGC CAGAAGAGATTAGCAGCGATATTCCGAATGTAAGCGAGGCGGCGTTATCTAAGTTGGATGAGGCGGGTATTGTTTATATT GGCGCTGAGGTGAAACCTGGCGATATTTTGGTTGGCAAGGTAACTCCCAAAGGGGAGACTCAATTGACACCGGAGGAAAA GCTCTTACGAGCTATCTTTGGGGAAAAGGCTTCTGATGTAAAGGATACGTCTTTGCGGGTGTCTTCAGGTATGCAGGGCA CCGTCATTGATGTCCAGGTTTTCACCCGTGATGGCGTGGAAAAGGATGCTCGGGCCTTAGAGATAGAGGAGATGGAGCTC GCTAAGATCAAAAAGGACTTGCGGGATGAATTTCGTATCGTGGAGACTGATATCTACCAACGTCTAGAGAAGGTGTTAGT AGGTAAGACGGTCGAAGGAGGGCCGGCAGAACTAAAAGCGGGCACTCAAATTACCCAAAGTTACCTTGCTGATTTACCTA GGGAACGATGGTTTGAGATTAGACTACGTAGCGAGGAGGCGGGTAAGCAGCTAGAATCGGTCGCTGGACAGCTTAAGGAA CAACGGATTGCGATGGATGAAAAATTCCAGCAGCAACGTGCCAAGCTCACTTCTGGACATGATCTCCCTCCTGGTGTCCA GAAAATGGTGAAGGTCTATTTAGCCGTAAAACGCCGTGTTCAACCAGGTGATAAGATGGCAGGCCGGCATGGAAATAAGG GAGTAATTTCCACGATTGTGCCTATTGAAGACATGCCCTATATGGAAGATGGGACTCCAGTGGATATCGTGCTTAATCCT CTAGGGGTACCTTCCCGGATGAATATTGGGCAGATTCTAGAAACCCATTTAGGATGGGCGGCAAAGGGCCTAGGTCGAAA AATTGGTGCTCTCCTTGATTCAGGGCAACAGGTTTCTGAACTGCGTGTTTTTTTAGATCGAATATATAACGCTAGTGGCA AGAGAGAAGACTTGAACTCTCTGAGTGATAAAGAGGTATTAGAGCTTGCGAATAACCTGAGTGATGGGGTTCCTATGGCG ACACCAGTATTCGATGGTGCTTCCGAGCAAGAGATTAAAGCTATGCTGGAGTTGGCTGATTTGCCTATAAATGGGCAGAC AAATCTTTATGATGGCAGGAGTGGAAAAGCCTTTGCCCGCCCGATAACGGTAGGATATATGCATATGCTTAAATTGAACC ATTTAGTTGATGACAAGATGCATGCCCGTTCAACGGGTCCTTATAGCTTGGTTACTCAGCAGCCTTTGGGTGGGAAGGCC CAGTTTGGCGGACAGCGTTTTGGTGAGATGGAGGTATGGGCGCTGGAATCCTATGGTGCAGCCTATACTTTGCAGGAAAT GCTTACTGTGAAATCCGACGATGTGAGCGGGCGCACTAAGATGTATAAGAACATCGTAGATGGTGATTACCGTATGGAAG CGGGTATGCCGGAATCTTTTAATGTATTAACCAAAGAAATTCGTGCCCTCGGCATTGATATTGAACTGGAACAAGACTAA Protein sequence : MPYSLTEKKRIRKDFGKLHSILKTPFLLTIQIGSFLDFLQMDVPPGKRKDKGLHAAFKSVFPIKSYTEYAELQYSSYHLG VPSFEVKECQVRGLTYAAPLRVKLRLVIYDKESPASEQVVKDVKEQEVYMGEIPLMTPKGNFVINGTERVIVSQLHRSPG VIFEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDCIYARIDRRRKLLATILLRALGYSTEEILIMFFETISVKRQG SSYLLDLVPQRLRGESLPFDIASPDGEVIVEAGRRVTARHIKQMEKAGMKTLSVPKEFLIGKILTRDLIDTGTGEVLAKA NDEITAELLAVIENTDIQAFDLIYTNDLDRGSFISDSLRLDPTTTPLEAQMEIYRVMRPGEPPTKEAAQNLFQNLFFNPE RYDLSPVGRMKFNRRLGKEDITGPSILSKEDIVDVIKTLVDIRNGYGSVDDVDHLGNRRVRSVGEMAENQFRVGLVRVER AVRERLSLAESEGLMPQELINAKPVSAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPT HYGRVCPIETPEGPNIGLINSLAVYARINQYGFIETPYRKVVDGRVTAEVDYLSAIEEGQYVIAQANAAADEEGRLIDML VSCRHKNEFTLLPPEKVQYIDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRAETPLVGTGMEQFVARDSG VMVVARRGGIVDSVDAARVVVRVNDEETASDEPGVDIYNLIKYARSNQNTCINQSPLVKPGDTVAIGDVLADGPSTDMGE LALGQNLLVAFMPWNGYNFEDSILISERVVEEDRFTSIHIEELTCFARDTKLGPEEISSDIPNVSEAALSKLDEAGIVYI GAEVKPGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVSSGMQGTVIDVQVFTRDGVEKDARALEIEEMEL AKIKKDLRDEFRIVETDIYQRLEKVLVGKTVEGGPAELKAGTQITQSYLADLPRERWFEIRLRSEEAGKQLESVAGQLKE QRIAMDEKFQQQRAKLTSGHDLPPGVQKMVKVYLAVKRRVQPGDKMAGRHGNKGVISTIVPIEDMPYMEDGTPVDIVLNP LGVPSRMNIGQILETHLGWAAKGLGRKIGALLDSGQQVSELRVFLDRIYNASGKREDLNSLSDKEVLELANNLSDGVPMA TPVFDGASEQEIKAMLELADLPINGQTNLYDGRSGKAFARPITVGYMHMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKA QFGGQRFGEMEVWALESYGAAYTLQEMLTVKSDDVSGRTKMYKNIVDGDYRMEAGMPESFNVLTKEIRALGIDIELEQD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 69 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 69 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Nwat_2177 | YP_003761330.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 73 |
| Nwat_2177 | YP_003761330.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 72 |
| Nwat_2177 | YP_003761330.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 70 |
| Nwat_2177 | YP_003761330.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 69 |
| Nwat_2177 | YP_003761330.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 69 |
| Nwat_2177 | YP_003761330.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 69 |
| Nwat_2177 | YP_003761330.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 69 |
| Nwat_2177 | YP_003761330.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 69 |
| Nwat_2177 | YP_003761330.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 69 |
| Nwat_2177 | YP_003761330.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 69 |
| Nwat_2177 | YP_003761330.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 69 |
| Nwat_2177 | YP_003761330.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 69 |
| Nwat_2177 | YP_003761330.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 69 |
| Nwat_2177 | YP_003761330.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 69 |
| Nwat_2177 | YP_003761330.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 68 |
| Nwat_2177 | YP_003761330.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 67 |
| Nwat_2177 | YP_003761330.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 65 |
| Nwat_2177 | YP_003761330.1 | DNA-directed RNA polymerase subunit beta | CP001581.1.gene3846. | Protein | 5e-176 | 48 |
| Nwat_2177 | YP_003761330.1 | DNA-directed RNA polymerase subunit beta | AM180355.1.gene120.p | Protein | 0.0 | 47 |
| Nwat_2177 | YP_003761330.1 | DNA-directed RNA polymerase subunit beta | AE016830.1.gene3155. | Protein | 8e-172 | 46 |
| Nwat_2177 | YP_003761330.1 | DNA-directed RNA polymerase subunit beta | CP003583.1.gene2745. | Protein | 2e-173 | 45 |
