Gene Information

Name : AMED_3544 (AMED_3544)
Accession : YP_003765732.1
Strain : Amycolatopsis mediterranei U32
Genome accession: NC_014318
Putative virulence/resistance : Resistance
Product : peptide ABC transporter ATPase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 3841370 - 3842065 bp
Length : 696 bp
Strand : +
Note : -

DNA sequence : 
ATGACGCCGGTGCTCGCGATCCGCCGTGCCGGCAAGGAGTACCCCGGCGGCGTGCACGCCCTGACCGGCGTTTCGCTCAC
CATCGAGCCCGGCGAGCTGCTGGCCATCGTCGGCCCGTCGGGCTCCGGCAAGTCCACGTTGCTCAACCTGATGGGCACGC
TGGACCGGCCGACCAGCGGCTCGATCGAGATCGCCGGGCAGGACGTCACGGTGCTGCCCGACCGGGCGCTCTCGGCGTTG
CGCGCCCAGGAGATCGGGTTCGTGTTCCAGCACTTCCACCTCGCCGACGGCCTGACGGCCACCGAAAACGTCGCCACCGG
CCTGTTGTACGCGGGCGTGCCGCGGCGCCGGCGGCGGCCGCTGGCCGATGCGGCACTCGACCGGGTCGGCCTGGCCCACC
GCCGCGCCCACCGGCCGCACCAGCTCTCCGGCGGGGAGAAGCAGCGCGTGGCCATCGCCAGGGCCCTGGTCAACGCGCCG
TCCCTGGTGCTGGCCGACGAGCCGACCGGCGCGCTGGACACCGGCACCAGCGCCGCGGTCCTGGACCTGCTGCGCGACCT
GCGCGACGGCGGCACGACCATCGCCGTGATCACCCACGACCGGGAGATCGCGGCCGCCATGCCGCGGCGGGTGGAGATCC
TCGACGGCCGGATCCGGTCCGACACGACCCGGCTCGCGGGCGTGGTGCCGGCATGA

Protein sequence : 
MTPVLAIRRAGKEYPGGVHALTGVSLTIEPGELLAIVGPSGSGKSTLLNLMGTLDRPTSGSIEIAGQDVTVLPDRALSAL
RAQEIGFVFQHFHLADGLTATENVATGLLYAGVPRRRRRPLADAALDRVGLAHRRAHRPHQLSGGEKQRVAIARALVNAP
SLVLADEPTGALDTGTSAAVLDLLRDLRDGGTTIAVITHDREIAAAMPRRVEILDGRIRSDTTRLAGVVPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 8e-27 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-25 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-25 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-25 44
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-25 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AMED_3544 YP_003765732.1 peptide ABC transporter ATPase NC_008702.1.4606598. Protein 2e-33 51
AMED_3544 YP_003765732.1 peptide ABC transporter ATPase NC_012469.1.7686878. Protein 1e-42 50
AMED_3544 YP_003765732.1 peptide ABC transporter ATPase CP001581.1.gene798.p Protein 9e-35 44
AMED_3544 YP_003765732.1 peptide ABC transporter ATPase CP001581.1.gene598.p Protein 3e-30 44
AMED_3544 YP_003765732.1 peptide ABC transporter ATPase NC_012469.1.7686946. Protein 6e-25 41