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Name : AMED_7946 (AMED_7946) Accession : YP_003770053.1 Strain : Amycolatopsis mediterranei U32 Genome accession: NC_014318 Putative virulence/resistance : Virulence Product : multidrug ABC transporter ATPase/permease Function : - COG functional category : V : Defense mechanisms COG ID : COG1132 EC number : - Position : 8741362 - 8745108 bp Length : 3747 bp Strand : + Note : - DNA sequence : GTGACCGTCGCTCCGCCCCGCTCCCGTCAAGAGCTCCCACCCACCGAGACCGCCGGCTGGATCCGCCGGCTGTCCGCCGC GGCCTGGGAGCACCGTGTGCTCGTCGTGCTGTCGCTGCTCGCCGCCGCGTTCGGCGTCGGCGTGCAGGCCGCCAGCCCGT TGCTGGTGCGCACGGCGGTGGACGACGCGGTCGCCGGGCAGACCGGTGGCCTGCCCGGGATCGCCGTCTTCCTGGTCGCG CTGCAGCTGATCGCCTTCGGCACCGCGTTCGCGCGCCGCTACCTCGGCGGGAAGCTCGCCCTCGACGTGCAGCACGATCT GCGCCAGCGCGTCTTCAACGCCGTTTCGCGGCTGGACGGCGGCAAGCAGGACGCGCTGCGCACCGGCCAGGTCGCCTCGC GCGCGATTTCCGACCTGCAGCTGGTGACCGGGATCCTGATGCAGGTCCCGCTGTCCTTCGGCTCGGTGGTCTTCGCGCTG CTGTCGTTCGTCGCGATGCTGTGGCTGTCCCCGGTGCTGACGCTGATCGCGCTGGTCGTCACGCCCGCGGTCGGCATCAT CGTGGCGCGCAGCCGCAAGCGCCTCTTCCCGGCGACGTGGTCGGCGCAGCAGCGCGCGGCGGATGTCGCGCAGCAGGTCG AAGAGACCGTCACCGGCGTCCGGGTGGTCAAGGGCTTCGGCCAGGAGACGCGGGAAGTTTCGAAGCTGGAAGCGACCGCG CGCAAGTTGTTCGGCGAACGGCTTCGCGCGGCGAAGCTCTCGGCGGTCCCGACGGCGACCACCGCCGCCCTGCCCGCCGC CGGCCAGGTGGCCGTGCTCGGCATCGGCGGCGTCCTCGCGCTGAACGGGTCCATCACCCTCGGCACGTTCCTGGCCTTCG CCACCTACCTCGCAACGCTGATCGGCCCGGCCCGGATGCTGTCCGGCCTGGTCGTGCAGGCGCAGCTGACCCGCGCCGGC GCCGAGCGGGTGTACGAGCTGATCGACGCGCAGCCGGAGGTCGTCGACTCCCCCGACGCGCGCCCGCTGCCGGAAGGGCC GCTGGGCGTGGAGCTCGACGGCGTCCGGTTCGGCTACACCCGCAGCGAACCGGTGCTGGCCGGTCTTTCGGTCACCGCGA ACCCGGGCGAAACCCTCGCACTGGTCGGCACGGCGGGCTCGGGCAAGTCGACGATTTCGTTGCTGCTGCCCCGGTTCTAC GACGTGCACGAGGGTGCGGTGCGGGTCGGCGGCCTCGACGTCCGGGACATCCCGCTGCGGCAGCTGCGGCAGGCGATCGG CGTGGTGTTCGAAGAGGCGTTCCTGTTCTCCTCCTCGATCCGGGACAACATCGCCTACGGCCGCCCGGACGCGAGCGAGG AGGAGATCGTCGCGGCGGCCAAAGCCGCGGAGGCGGACGGCTTCATCCGCGCGCTGCCGGACGGCTACGACACGCTGGTC GGCGAGCGCGGGCTGACCCTCTCGGGCGGCCAGCGGCAGCGGCTCGGGCTGGCCAGGGCCCTGATCACCGACCCGCGGAT CCTGGTGCTCGACGACGCGACCTCGGCCATCGACACCGTCACCGAAGCGGCGATCTACGACACCCTGCGCTCGGTGACCG CGGCCCGGACCACCCTGCTGATCGCCCACCGGCGCTCCACCCTCGCCCTGGCCGACCGGATCGCGGTACTGGACGAAGGC CGCGTCGTCGACGTCGGCACCGAGGCCGAGCTGATGGCGCGCTGCCCGCTGTTCCGCGAACTCGTGGCGGGCCCGGGCGA CGACGTCGAAGAGAAGCACCGCTGCGAAGGTCTGGACCGCGGTCCGGGCGGGGTCACGCCGTCGCTGTGGCCGCGTGACG AGAGCCGCGACGAGGTCGACGCACTGGCCGAAGCCGCGCGCCTGCGCAGTGGCGACCCGAACAGCAGCGGGTTCGTCGGC GGGGGCGGCGGGCTCGACGTGCCGCCGACACCGGAGCTGATCGAGGGCGTGCGCAAGCTCCCGGCCGCCACCGACGAGCC GCGGCTGCCCGGTGTGGACGTCACCGCGCCCGACCCGAAGTTCCGGCTGGCCGGGCTGCTGCGGCCGGTCCGCGGGCCGC TGGCCCTGGTGATCGGGCTGGTGGCGGCGGACGCGCTGGCGTCGATCGCGCTGCCCGGGCTGTACCAGTTCGGCGTCGAC CACGGGGTGCGGACCGGTGTCGAGTGGATGATCTGGCTGGCCGCCGGGATCGGCGCCGCGGTGATCGCGGCCGACTGGCT GGTGGTCTTCGCGCAGACGCGGCTGACGTCGCGGGTGGGCGAGACGGTGCTGTACGCGCTGCGCGTCCGCAGTTACGCGC ACCTGCAGCGGCTCGGGCTCGACTACTACGAGCGGGAGCTGTCCGGGAAGATCATGACCCGGATGACGACGGACGTCGAC GCGCTCTCGACGTTCCTGCAGACCGGGCTCGCCACCGCGGTGGTCAGCGCGCTGACGCTGGCCGGGATCACGGCCGCGCT GCTGGTCACCGACGCCGGGCTGGCGCTGTACGCGCTGGCGATGGTGCCGGTGCTGGCGGTGGCCACGGTGATCTTCCGGC GCTCGGCGTCGAAGGCGTACAACGAGGCCCGCGAGCGGGTCAGCGTCGTGAACGCGGACATGCAGGAGAACGTCAGCGGG CTGCGGGTCGCGCAGGCGTACACGCGTGAAGACCGTTCCGCGGAGGCGTTCGCCTCGCGCAGCGACGACTACCGGCGCTC GCGGCTGCGGGCCCAGCGGTACGTGGCGACGTACTTCCCGCTGGTGGCGCTGATGTCGGACCTGGCGACCACGACGGTGC TGGTGGCCGGGGCCAACCGCGTCTCGGCGGGCACGCTGTCGGCCGGCGTGCTGCTCGCGTTCCTGCTGTACCTGCAGCAG TTCTTCTCCCCGATCCAGCAGCTGTCGGCGGTGTTCGACGGCTACCAGCAGGCGAGCGTCGGCCTGAACCGCATCGGCGA CCTGCTGCGGACGCCGACGTCGGTGCCGGCGGCGGAGAAGGCGGTCGAGGTGCCGGCCCGGCTGCGCGGCGAAGTCTCGT TCAAGGAGGTCGAGTTCTCCTACACCGGCGCCGGGACGCCGGCGCTGGCGGAGTTCTCGCTGGACGTCGCGGCCGGCGAG ACGATCGCGCTCGTCGGCGCGACCGGCGCCGGGAAGTCGACGGCGGTGAAGCTGGTGGCGCGCTACTACGACGTCACCGG CGGCGAGGTCCGGATCGACGGCACGGACGTCCGCGAGTACGACCTGGCCGGCCTGCGGCGCCGGATGGGCGTGGTGCCGC AGGAGGCGCACCTGTTCTCGGGCACGGTGGCCGACAACGTCCGCTACGGCCGCCCCGCCGCGTCCGACGCGGAGGTCGAG GCGGCGGTCCGCGCGGTGGGCGCGCTGGACGGCGTCGCGGCCCTGCCCTCGGGCTTCCTGCAGCCGGTGGGCGAGCGCGG CCGCTCGCTGTCGGCGGGCCAGCGCCAGCTGGTGGCCCTGGCGAGGGCGGAGCTGGTGGACCCGGACGTCCTCCTCCTCG ACGAGGCCACGGCGGCCCTGGACCCCTCGACGGAGGCGGCGGTCCTCCGGGCCACGGAGACGGTGGCCCGCCGCCGCACG ACGTTCGTGGTCGCCCACCGCCTGGCGACGGCGGCCCGCGCCGACCGCATCGTGGTCCTGGACCACGGCGGCATCGTGGA AACCGGAACCCACGACGAGCTCCTGGCCGCCAACGGCCCCTACGCCCGCCTCTGGGCCCTCGGCTGA Protein sequence : MTVAPPRSRQELPPTETAGWIRRLSAAAWEHRVLVVLSLLAAAFGVGVQAASPLLVRTAVDDAVAGQTGGLPGIAVFLVA LQLIAFGTAFARRYLGGKLALDVQHDLRQRVFNAVSRLDGGKQDALRTGQVASRAISDLQLVTGILMQVPLSFGSVVFAL LSFVAMLWLSPVLTLIALVVTPAVGIIVARSRKRLFPATWSAQQRAADVAQQVEETVTGVRVVKGFGQETREVSKLEATA RKLFGERLRAAKLSAVPTATTAALPAAGQVAVLGIGGVLALNGSITLGTFLAFATYLATLIGPARMLSGLVVQAQLTRAG AERVYELIDAQPEVVDSPDARPLPEGPLGVELDGVRFGYTRSEPVLAGLSVTANPGETLALVGTAGSGKSTISLLLPRFY DVHEGAVRVGGLDVRDIPLRQLRQAIGVVFEEAFLFSSSIRDNIAYGRPDASEEEIVAAAKAAEADGFIRALPDGYDTLV GERGLTLSGGQRQRLGLARALITDPRILVLDDATSAIDTVTEAAIYDTLRSVTAARTTLLIAHRRSTLALADRIAVLDEG RVVDVGTEAELMARCPLFRELVAGPGDDVEEKHRCEGLDRGPGGVTPSLWPRDESRDEVDALAEAARLRSGDPNSSGFVG GGGGLDVPPTPELIEGVRKLPAATDEPRLPGVDVTAPDPKFRLAGLLRPVRGPLALVIGLVAADALASIALPGLYQFGVD HGVRTGVEWMIWLAAGIGAAVIAADWLVVFAQTRLTSRVGETVLYALRVRSYAHLQRLGLDYYERELSGKIMTRMTTDVD ALSTFLQTGLATAVVSALTLAGITAALLVTDAGLALYALAMVPVLAVATVIFRRSASKAYNEARERVSVVNADMQENVSG LRVAQAYTREDRSAEAFASRSDDYRRSRLRAQRYVATYFPLVALMSDLATTTVLVAGANRVSAGTLSAGVLLAFLLYLQQ FFSPIQQLSAVFDGYQQASVGLNRIGDLLRTPTSVPAAEKAVEVPARLRGEVSFKEVEFSYTGAGTPALAEFSLDVAAGE TIALVGATGAGKSTAVKLVARYYDVTGGEVRIDGTDVREYDLAGLRRRMGVVPQEAHLFSGTVADNVRYGRPAASDAEVE AAVRAVGALDGVAALPSGFLQPVGERGRSLSAGQRQLVALARAELVDPDVLLLDEATAALDPSTEAAVLRATETVARRRT TFVVAHRLATAARADRIVVLDHGGIVETGTHDELLAANGPYARLWALG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| iroC | CAC43427.2 | ABC transport protein | Virulence | PAI III 536 | Protein | 8e-162 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| AMED_7946 | YP_003770053.1 | multidrug ABC transporter ATPase/permease | VFG1653 | Protein | 4e-162 | 41 |
