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Name : secD (Hsero_1237) Accession : YP_003774661.1 Strain : Herbaspirillum seropedicae SmR1 Genome accession: NC_014323 Putative virulence/resistance : Unknown Product : export membrane protein SecD transmembrane Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1399618 - 1401522 bp Length : 1905 bp Strand : + Note : - DNA sequence : ATGAATCGTTACTCTCTCTGGAAATACGCACTGATCGTCCTGGCCCTGCTGTTCGGCGTGATCTATACCGTCCCGAACTT CTTCGGCGAATCTCCTGCGGTGCAGATCAGCAGCGCCAAGTCGACCCTCAAGGTCGAGCCTGCCGTGGCTGGCCGTGTCG ATCAGATCCTGAAACAAGGCAATCTCGGCGCAGAGAGTGTGGCGTTCGACAACAGCGGTTCGCAGCCCTCGGTGCGCGCC CGCTTTGCCACCACCGACATCCAGTTCAAGGCCAAGGCCCTGCTGGAAAAGGAACTCAATACCGACCCCAGCGACCCGAC CTACATCGTCGCCTTCAACCTGCTGCCCAACACCCCGCAATGGCTGCAGAGCCTGCATGCCTTCCCGATGTACCTGGGCC TGGACTTGCGCGGCGGCGTGCACTTCCTGATGCAGGTCGACATCAAGGCGGTCCTGAACAAGCGCCTGCAGGGCATGCAG GCCAGCGTGCGCAGCCTGCTGCGTGACAAGAACATCCGCCACAGCGGCATCAGCCGTTCCGGTGACAGCATCGAGATCTC CTTCCGCGATGCCGACACCCGCAACAAGGCCCGCGCCGCCCTGGGCGAGCTGCAGGAAATGCTGCTGACCGACGCCGGCA GCGGCGATGACCTCAAACTCATCGCTACCCTGCGTCCCGAAGCCCTGAAGCAGACCCAGGAAGACGGCGTCAAGCAGAAC ATCAGCACTCTGTCCAAGCGCGTCAACGAGCTGGGCGTGGCCGAGCCGCTGATCCAGCGCCAGGGCGCCGACCGCATCGT GGTCGAGCTGCCGGGCGTGCAGGACGTCTCGCGCGCCAAGGACATCATCGGCCGCACCGCCACGCTGGAAGTGCGCATGG TGGACGAAAGCGTGGTGCGCGGTACCGAAGAAACCACCGCCATCCCCTTCGGTTCCGAACTGTTCAAGATCGGCAAGGGC GCGCCCGTGGTCCTGAACAAGGAACCGGTGCTCACCGGCGACTACATCTCCAACGCCTCGGCCAGCTTCGATGAAAACCA CCAGCCGGCGGTCAGCATCGACCTGAACGGCGACGGCGGCCGCAAGATGCGCGAAGCCACCCGCGACAAGGTGGGCAAGG CCATGGCCATCGTCCTGTTCGAAAAGGGCAAGGGCGAAGTCCTGACGGTGGCCACGATCCGTTCCGAACTGGGTTCGCGC TTCCAGATCACCGGCATGGGTTCGCCCGAAGCCGCCAGCGACCTGGCCCTGCTGCTGCGCGCCGGTTCCCTGGCCGCGCC CATGGACATCATCGAAGAGCGCACCATCGGCCCGCAACTGGGCGCCGACAACATCAAGAAGGGCTTTGACTCGGTGCTGT ATGGCTTCCTGGCCATGGCCATCTTCATGGTGATCTACTACCAGCTGTTCGGTTTCTTCAGCGCCCTGGCGCTGTCGGTG AACGTGCTGCTGCTGGTGGCGCTGCTCTCCACGCTGCAGGTCACGCTGACCCTGCCCGGTATCGCGGCGATCGCGCTGGC GCTGGGTATGGCGATCGACTCCAACGTGCTGATCAACGAGCGCATCCGCGAAGAACTGCGCGCCGGCAATTCGCCGCAGG CCGCCATCGCCGCCGGTTTCGATCGCGCGTGGGCGACCATCCTGGACTCCAACGTGACCACCCTGATCGCCGGCCTGGCG CTGCTGATCTTCGGTTCCGGCGCCATTCGCGGCTTTGCCGTGGTGCACTGCCTGGGCATCCTGACCTCGATGTTCTCGGC CGTGTTCTTCTCGCGTGGCGTGGTCAACCTCTGGTATGGCCGCAAGAAGCGCCTCTCCAGCCTGGCCATCGGCCAGATCT GGAAGCCCGAGGGTGAGGTGCTGACCACCTCCGGCAAGGCTTCGGCCAAGCGCGACGGCAAGTAA Protein sequence : MNRYSLWKYALIVLALLFGVIYTVPNFFGESPAVQISSAKSTLKVEPAVAGRVDQILKQGNLGAESVAFDNSGSQPSVRA RFATTDIQFKAKALLEKELNTDPSDPTYIVAFNLLPNTPQWLQSLHAFPMYLGLDLRGGVHFLMQVDIKAVLNKRLQGMQ ASVRSLLRDKNIRHSGISRSGDSIEISFRDADTRNKARAALGELQEMLLTDAGSGDDLKLIATLRPEALKQTQEDGVKQN ISTLSKRVNELGVAEPLIQRQGADRIVVELPGVQDVSRAKDIIGRTATLEVRMVDESVVRGTEETTAIPFGSELFKIGKG APVVLNKEPVLTGDYISNASASFDENHQPAVSIDLNGDGGRKMREATRDKVGKAMAIVLFEKGKGEVLTVATIRSELGSR FQITGMGSPEAASDLALLLRAGSLAAPMDIIEERTIGPQLGADNIKKGFDSVLYGFLAMAIFMVIYYQLFGFFSALALSV NVLLLVALLSTLQVTLTLPGIAAIALALGMAIDSNVLINERIREELRAGNSPQAAIAAGFDRAWATILDSNVTTLIAGLA LLIFGSGAIRGFAVVHCLGILTSMFSAVFFSRGVVNLWYGRKKRLSSLAIGQIWKPEGEVLTTSGKASAKRDGK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 1e-93 | 43 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 1e-93 | 43 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 1e-93 | 43 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 4e-94 | 43 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 2e-93 | 43 |
