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Name : glcD (Hsero_3827) Accession : YP_003777213.1 Strain : Herbaspirillum seropedicae SmR1 Genome accession: NC_014323 Putative virulence/resistance : Unknown Product : glycolate oxidase (FAD-linked subunit) oxidoreductase Function : - COG functional category : C : Energy production and conversion COG ID : COG0277 EC number : 1.1.3.15 Position : 4382911 - 4384398 bp Length : 1488 bp Strand : - Note : - DNA sequence : ATGAATGCTCCAGTCCAACCGTCCTTCGCGCCGGCTCGCCAGCGTGAAGTCGTCGATGCCCTGCGCCGGGTCGTGCCCGC GCACTGCGTGCTCTGCGACGAGGAAGACACCCGTCCCTACGAATGCGACGGCCTGGCCGCCTACCGCCAGTTGCCCATGG TGGTGGTGCTGCCCGAGAACGAGGCCCAGGTGGTGGCCATCATGAAGACCTGCCACGCGTTGCAGGTGCAGATCGTGCCG CGCGGCGCCGGCACCGGCCTCTCTGGCGGGGCCACCCCGATTGCCGATGGCGTGGTGGTGTCCACGGCCAAGTTCAACCA GATCCTGCAGATGGACAAGTATTCCCGCACCGCCGTGGTCCAGCCCGGCGTGCGCAACCTGGCCATTTCCGAAGCGGCGG CCCCGCACGGCCTCTATTACGCGCCGGACCCCTCCTCGCAGATCGCCTGTTCCATCGGTGGCAACGTGGCCGAGAACTCG GGCGGCGTGCATTGCCTGAAATACGGCCTGACCGTGCATAACGTGCTGCGCGTGCGCATGGTCACCATCGAAGGCGAGGT GGTGGAGCTGGGCAGCGGCGCGCTGGATGCGCCGGGCCTGGACCTGCTGGCCGTCTTCATCGGCTCCGAAGGCATGCTGG GCGTGGTCACCGAAGTGACCGTCAAGCTCGTGCCCAAGCCACAGGCGGCGCGCGTGATCATGGCCTCCTTCGACGATGTG GTCAAGGGCGGCAATGCGGTGGCCAACGTGATCGCCGCCGGCATCATTCCCGCAGGCCTTGAGATGATGGACAAGACCAG TTCGCGCATGGTGGAACCCTTCGTCAAGGCCGGCTATGACATCGACGCCGAAGCCATCCTGCTGTGCGAATCCGACGGTA CCGTGGAAGAAGTGGAAGAAGAAATCGGCCGCATGACCGACGTGCTCAATGCCAGCGGCGCCACCGCCATCGCCTGCTCG CAGTCGGAGGCCGAGCGCCTGCGCTTCTGGTCCGGCCGCAAGAACGCCTTCCCGGCGGCAGGCCGCATCTCGCCCGACTA CTACTGCATGGATGGCACCATCCCGCGCAAGAAGCTGGCGCAGGTGCTCTTGGGCATCGCCGAGATGGAAAAGAAATACG GCCTGCGCTGCGCCAACGTCTTCCATGCCGGTGACGGCAACCTGCATCCGCTGATCCTCTTCGATGCCAACATCGCCGAT GAATTCCACCGCGCCGAACTGTTCGGCGCCGAGATCCTGGAGCTGTGCGTGGAAGTGGGCGGCACCATCACCGGCGAGCA TGGCGTGGGCATCGAGAAGATCAATTCCATGTGCGTGCAGTTTTCGCCCGCCGAGCGCGAGACCTTCTTCAAGCTCAAGC GCGCCTTCGACCCGGCCTTCCTGCTCAACCCGGACAAAGCCATTCCCACCCTGCATCGCTGCGCCGAGTACGGCAAGATG CATGTGCAGCGCGGCCAGCTGCGCTTCCCCGATCTGCCGAGATTCTGA Protein sequence : MNAPVQPSFAPARQREVVDALRRVVPAHCVLCDEEDTRPYECDGLAAYRQLPMVVVLPENEAQVVAIMKTCHALQVQIVP RGAGTGLSGGATPIADGVVVSTAKFNQILQMDKYSRTAVVQPGVRNLAISEAAAPHGLYYAPDPSSQIACSIGGNVAENS GGVHCLKYGLTVHNVLRVRMVTIEGEVVELGSGALDAPGLDLLAVFIGSEGMLGVVTEVTVKLVPKPQAARVIMASFDDV VKGGNAVANVIAAGIIPAGLEMMDKTSSRMVEPFVKAGYDIDAEAILLCESDGTVEEVEEEIGRMTDVLNASGATAIACS QSEAERLRFWSGRKNAFPAAGRISPDYYCMDGTIPRKKLAQVLLGIAEMEKKYGLRCANVFHAGDGNLHPLILFDANIAD EFHRAELFGAEILELCVEVGGTITGEHGVGIEKINSMCVQFSPAERETFFKLKRAFDPAFLLNPDKAIPTLHRCAEYGKM HVQRGQLRFPDLPRF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| glcD | CAE85245.1 | GlcD protein | Not tested | PAI V 536 | Protein | 8e-139 | 63 |
