Gene Information

Name : fecI (Hsero_4481)
Accession : YP_003777855.1
Strain : Herbaspirillum seropedicae SmR1
Genome accession: NC_014323
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma-70 factor, ECF subfamily (sigma-24) transcription regulator protein
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 5125857 - 5126366 bp
Length : 510 bp
Strand : +
Note : -

DNA sequence :

ATGGAAATCCTCATGTCCCCCGCAGAGGCGCATCAAGAGATTGGTGGGCTCTATCGCGAGCATCACGGCTGGCTGGTGGC
CTGGCTGAGCCGCCGGCTGGCCTGCCGCCACCTGGGCGCCGACCTGGCGCAGGACACCTTCGTACGCCTGCTGGGCCATC
GCCCGCCGCCTGACCTGCGCGAGCCGCGCGCCTACCTGACCACCATCGCCAAGGGCCTGGTGGCCAGCCATCTGCGCCGA
CGCCAGCTGGAGACGGCCTATCTGGAAGCGCTGGCGGCGCTGCCCGAACCCAGCCAGCCCTCAGCCGAAGAACGCCTGCT
GGTGCTGGACACCCTGTGCGAGATCGACCGCATCCTCGACCAGCTGCCGGCCCGTGCCCGCCAGGTCTTCCTGCTGGCGC
AGCTCGATGGCCTGCCCTATGCCAGCATTGCCGGATTGCTCGGCATCTCGCTGAGCACCGTCAAGCGTCACATGGTGCTG
GCCCTGCGCCATTGCCTGGCGGCGCTGTGA

Protein sequence :

MEILMSPAEAHQEIGGLYREHHGWLVAWLSRRLACRHLGADLAQDTFVRLLGHRPPPDLREPRAYLTTIAKGLVASHLRR
RQLETAYLEALAALPEPSQPSAEERLLVLDTLCEIDRILDQLPARARQVFLLAQLDGLPYASIAGLLGISLSTVKRHMVL
ALRHCLAAL

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	3e-23	46

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
fecI	YP_003777855.1	RNA polymerase sigma-70 factor, ECF subfamily (sigma-24) transcription regulator protein	VFG1049	Protein	1e-23	46