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Name : rpoB (NIDE1303) Accession : YP_003796979.1 Strain : Candidatus Nitrospira defluvii Genome accession: NC_014355 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 1257105 - 1261064 bp Length : 3960 bp Strand : + Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12424241, 15469913, 16284617, 17012380, 2068078, 3056723, 377281, 6266829; Product type e : enzyme DNA sequence : ATGTCGGAATCGACTCTTTCGGAGTTTGTCGAACGTAAGGATTTTTCTCGGATTCGTACGAGCATCGATATTCCCGATCT CATCGAAATCCAGAAGCGGTCCTACGAAGAGTTCCTCCAAATGGAAGTCGAGCCGGACCGTCGCAAAGATCAGGGTTTGC AGGCGGCATTAGCCAGCGTCTTTCCCATTACGGACTACAACAACACGGCGGCCTTGGAGTTCTCCAACTATTCGTTGGGA ACTCCGAAGTACGACGAACGGGAGTGCCTTGAGCAGGGCATGACGTTTGCCGTTCCCTTGAAGTTGCGTGTGCGGTTGAT TGTCTTCGATAAAGAGGACAAGGGGCCGAAGAAGAAGGTGCTAGACGTTCGGGAGCAGGAGGTCTATGTCGGCGAACTTC CGCTCATGACCGAGCGCGGTACGTTCCTTATCAACGGGACCGAGCGAGTGGTGGTCAGCCAGTTGCACCGCTCGCCGGGC GCGTCGTTCACGCACGATAAGGGGCGGACCCATGCCAGCGGCAAGGTGTTGTATTCTGCCCGGATTATTCCCTATCGCGG ATCCTGGCTCGATTTCGAGTTCGACGCACGGGACATTCTTTACGTTCGCATCGATCGCCGTCGTAAAATGCCTGCGACGA TCCTGTTGAAGGCGTTCGGGTATAGCACCGACGACTTATTGCGGATGTATTACCCCGTGGAGGAGATTCGTGTTTCCAAG GGAAAGCTCTACCGGAAGCTCGATCCTGAAATCCATCACGGGTTGAAGTGTTCGACGGAAGTGATGGAGAAGGGCGGCAA AGACCCGCTCGTTCGCGAAGGCGCGAAGCTGACGAAAGTCTTGATCGCCAAGCTGAAGGCGGCGGGCATCAAGGAAATTC CCGTCACCCCAGCCGAGTTGGTGGGACGTGCGGTCCTGACGGAGTTGGTCGACAGCGGCAAGAAGCAGTCGCTGGCCGAG AAGAACCAGCGTCTGACCGAAGAGATTCTGGAGAAGATCCTTGATAGCGATATCGAGGAATTCAAGGTCATTTATCTTGA TACGACCAATGCCACGCTGGTCATCCTCGATACGCTCGACATGGAGCGCACAGGATCGAAGGAAGAGGCGATGGTCGAAA TCTATCGCCGCCTCAGGCCGGGTGAGACACCGTCTGTCGAAACTGCCAGAGCCCTGTTCGATAATTTGTTTTTAAGCCCC AAGCGATACGATCTGTCGCCCGTCGGACGGCTCAAGCTCAACAAGAAGCTGGGCCTCGATTTCGCGCTCGAACAACGGAC CTTGACGGCGCAGGATATCGTGGAGGTGGTGCGATATTTGGTGAACCTCAAGATCGGTCGCGGCGAGATCGACGACATCG ACCACTTGGGCAACCGGCGTGTCCGGTCGGTCGGTGAACTGTTGGAGAACCAGTTCCGGTTGGGTCTCGTGCGTATGGAG CGAAGCATTAAAGAGCGCATGAATCTGCTGGATATGGAGACCGTATTGCCGCATGACCTGATCAACGCCAAGCCCGTGGT GGCGGCGGTGAAGGAATTTTTCAGCAGCAGTCAGCTCTCCCAGTTCATGGACCAAACGAATCCCCTTGCCGAGATTACGC ACAAGCGCCGGCTGTCAGCTCTTGGCCCCGGCGGTTTGACTCGCGAGCGCGCAGGTTTCGAAGTGCGCGACGTGCATCCA TCTCACTACAGCCGCATTTGTCCGATTGAGACGCCGGAAGGTCCGAACATCGGCTTGATTACGTCACTCGCAACCTACGC GCGGATCAACGAATTTGGATTTATCGAGGCGCCGTATCGGAAGGTCGTGAAGGGGCGCGTCAGTGACGAACTGGAATATC TTTCGGCGATTGAGGGAGACAAGTACATCATTGCCCAGGCGAATTCGAAAGTTGATACGTCGGGTCGCCTCGTGTCCGAG ACGGTGTCGGCACGCTCAGCCGGGGACTTTATCACCGCGACCCCCGACAAGATCGAATATATGGACGTGTCCCCGAAGCA GGTCGTCAGCGTCGCGACGGCGCTGGTACCGTTTCTTGAGCATGACGACGCAAACCGCGCCTTGATGGGATCGAACATGC AGCGCCAGGCGGTGCCGCTGTTGAAGGCTGAGTCGCCGCTGGTCGGCACCGGCATGGAAGCCGTAGTTGCGCGTGACTCA GGTTATGTTGTCCAGGCCAAGCGTGAAGGTGTCGTGGAAAGTGTCGATGCCACCCGAATTGTGGTGCGGGCTGATGCCAA AGAGGGCCGCAAGCGCAACGATTCCGGCCTTGATGTGTATGAGATGATCAAGTTCCAGCGCTCGAACCAGAATACCTGTA TCACTCAGACTCCCGTGGTTCGGATCGGTGAGCCGGTCAAGAGGGGGCAGGTGCTGGCCGATGGTCCCGCTATCGATCAT GGAGAGCTCGCACTCGGAAAGAATGTGCTCGTCGCGTTTATGCCGTGGGGTGGATACAACTTCGAAGACGCGATTTTGTT GAGTGAAAAGCTGGTGCGGGAAGATGCCTTCACGTCCATTCATATCGAGGAGTTTGAAGTCGAAGCCCGCGATACCAAAT TGGGTAAGGAAGATATTACCCGCGACATTCCGAATGTCGGCGAAGAAGCGCTTCGTGACCTTGATGAGAGCGGAATCATC CGAATCGGCGCCGAGGTCAAGCCTGGCGACATTCTCGTCGGGAAGGTGACTCCGAAGGGCGAGACCCAACTGACGCCGGA AGAGAAGCTGTTGCGTGCAATTTTCGGTGAGAAGGCCGGAGACGTCAAGGATACGTCTCTCACGGTGCCGCCCGGCGTGG AAGGCATCGTCGTCGATGTGAAGATCTTCTCCCGCAAAGGCTTGGATAAGGATGAACGCTCCAAGAGTATCGAGAGCGAA GATCATATGAAGCTGCAGCGCGACCACCAGGAAGAGCTGCGGATCATTGAAGATGAAAAGACCAAGAAGGTCCGCAAGCT GCTGCTCGGTAAAGTGGTCGGACGGGACCTGATGGATCCAGAAACGGGCGGTGTCATTCTGAAGAAGAAGGGCAAGCTCA CTGCGGAAATTTTGAAGCGGCTTCCGGACGACATGGTGCGGCACATTATTCTCAGCGATCCGGATGAGCAGAAGGAGCTG GAGGATGTCGAGCGCCGCGCCAAGGAGCAGATTGAAATCCTGCAGACCCTGTACGACGAAAAAGTTGGCCGATTAAGACG GGGCGATGAACTTCCGCCCGGTGTGATCAAGTTGGTCAAGGTCTACATCGCAATGAAGCGGAAGATCCAGGTCGGCGACA AAATGGCGGGACGTCACGGGAATAAGGGTGTCGTTTCACGCGTGCTGCCGGAAGAGGATATGCCCTATTTGCCGGACGGA ACTCCGGTGGAAATCGTTCTGAATCCGTTGGGCGTACCGTCCCGTATGAACGTTGGACAAATCCTGGAGACGCACTTGGG GTGGGCTGCCAGAGCGTTGGGGATCAAGGTGGCGAGCCCCGTATTCGACGGGGCTTCTGAGAAAGAGATCAAGGAACTGC TCAAGAAGGCGAAGTTGTCTCCAAGTGGTCAAACGATGTTGATGGACGGGCGTACCGGTGAATCCTTCAGCAGCCCCGTC ACGGTCGGATATATGTATGTCTTGAAGCTCCACCACCTGGTGGACGATAAAATTCACGCTCGGTCCATCGGTCCATACTC CCTTGTGACGCAACAGCCACTTGGAGGAAAGGCGCAGTTCGGTGGTCAACGTTTGGGAGAGATGGAAGTGTGGGCGCTTC AGGCCTACGGGGCCGCGTCCATTCTCCAGGAATTCCTGACTGTGAAATCCGACGACGTGCCGGGCCGGTCCCGCATGTAC GAGGCAATTGTGAAGGGCGAACCGTTCCTGGAGCCTGGATTGCCGGAATCGTTCAACGTGTTAGTCAAAGAGCTGCAAAG TCTTGGGCTCGATGTCGAGCTGGTTAAATCAAAGGACTGA Protein sequence : MSESTLSEFVERKDFSRIRTSIDIPDLIEIQKRSYEEFLQMEVEPDRRKDQGLQAALASVFPITDYNNTAALEFSNYSLG TPKYDERECLEQGMTFAVPLKLRVRLIVFDKEDKGPKKKVLDVREQEVYVGELPLMTERGTFLINGTERVVVSQLHRSPG ASFTHDKGRTHASGKVLYSARIIPYRGSWLDFEFDARDILYVRIDRRRKMPATILLKAFGYSTDDLLRMYYPVEEIRVSK GKLYRKLDPEIHHGLKCSTEVMEKGGKDPLVREGAKLTKVLIAKLKAAGIKEIPVTPAELVGRAVLTELVDSGKKQSLAE KNQRLTEEILEKILDSDIEEFKVIYLDTTNATLVILDTLDMERTGSKEEAMVEIYRRLRPGETPSVETARALFDNLFLSP KRYDLSPVGRLKLNKKLGLDFALEQRTLTAQDIVEVVRYLVNLKIGRGEIDDIDHLGNRRVRSVGELLENQFRLGLVRME RSIKERMNLLDMETVLPHDLINAKPVVAAVKEFFSSSQLSQFMDQTNPLAEITHKRRLSALGPGGLTRERAGFEVRDVHP SHYSRICPIETPEGPNIGLITSLATYARINEFGFIEAPYRKVVKGRVSDELEYLSAIEGDKYIIAQANSKVDTSGRLVSE TVSARSAGDFITATPDKIEYMDVSPKQVVSVATALVPFLEHDDANRALMGSNMQRQAVPLLKAESPLVGTGMEAVVARDS GYVVQAKREGVVESVDATRIVVRADAKEGRKRNDSGLDVYEMIKFQRSNQNTCITQTPVVRIGEPVKRGQVLADGPAIDH GELALGKNVLVAFMPWGGYNFEDAILLSEKLVREDAFTSIHIEEFEVEARDTKLGKEDITRDIPNVGEEALRDLDESGII RIGAEVKPGDILVGKVTPKGETQLTPEEKLLRAIFGEKAGDVKDTSLTVPPGVEGIVVDVKIFSRKGLDKDERSKSIESE DHMKLQRDHQEELRIIEDEKTKKVRKLLLGKVVGRDLMDPETGGVILKKKGKLTAEILKRLPDDMVRHIILSDPDEQKEL EDVERRAKEQIEILQTLYDEKVGRLRRGDELPPGVIKLVKVYIAMKRKIQVGDKMAGRHGNKGVVSRVLPEEDMPYLPDG TPVEIVLNPLGVPSRMNVGQILETHLGWAARALGIKVASPVFDGASEKEIKELLKKAKLSPSGQTMLMDGRTGESFSSPV TVGYMYVLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALQAYGAASILQEFLTVKSDDVPGRSRMY EAIVKGEPFLEPGLPESFNVLVKELQSLGLDVELVKSKD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 56 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 56 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_003796979.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 56 |
| rpoB | YP_003796979.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 56 |
| rpoB | YP_003796979.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 56 |
| rpoB | YP_003796979.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 56 |
| rpoB | YP_003796979.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 56 |
| rpoB | YP_003796979.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 56 |
| rpoB | YP_003796979.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 56 |
| rpoB | YP_003796979.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 56 |
| rpoB | YP_003796979.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 55 |
| rpoB | YP_003796979.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 55 |
| rpoB | YP_003796979.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 54 |
| rpoB | YP_003796979.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 54 |
| rpoB | YP_003796979.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 54 |
| rpoB | YP_003796979.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 54 |
| rpoB | YP_003796979.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 54 |
| rpoB | YP_003796979.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 54 |
| rpoB | YP_003796979.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 54 |
| rpoB | YP_003796979.1 | DNA-directed RNA polymerase subunit beta | AE016830.1.gene3155. | Protein | 0.0 | 49 |
| rpoB | YP_003796979.1 | DNA-directed RNA polymerase subunit beta | CP001581.1.gene3846. | Protein | 0.0 | 48 |
| rpoB | YP_003796979.1 | DNA-directed RNA polymerase subunit beta | NC_012469.1.7686402. | Protein | 0.0 | 46 |
