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Name : Deba_2945 (Deba_2945) Accession : YP_003808892.1 Strain : Desulfarculus baarsii DSM 2075 Genome accession: NC_014365 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 3245667 - 3249827 bp Length : 4161 bp Strand : - Note : COGs: COG0085 DNA-directed RNA polymerase subunit beta/140 kD subunit; InterProIPR007644:IPR007642:IPR007645:IPR019462:IPR 007120:IPR007641:IPR007121:IPR010243; KEGG: sfu:Sfum_1549 DNA-directed RNA polymerase, subunit beta; PFAM: RNA polymerase Rpb2 domai DNA sequence : ATGAGCCAGGCGACCGAGACCAGGACCCGCGTCCGCAAAAACTTCGGCAAGATCGCCAAAATCATCGACATCCCGAACCT CATCGATATGCAGAAGCAGAGCTACGAGCGCTTTCTGCAAAAGGACGTCGCTCACGCGGCGCGAAGGGATGTCGGCCTCC ACGCCGTCTTCAGAAGTGTTTTTCCCATTCGTGATTTTTCCGGTACTTCGTCCCTGGAATACGTTTCTTACGATTTCGGC GAGGTCAAGTACGACGAAGAGGAGTGCCTGGCCCGCGGCATGACCTTCGAGGCGCCGCTCAAGCTCACCGTGCGCCTGGT GGTCTACGACATTGACAAGGAAACCGACGTTCAGTCCATCCGCGACATCAAGGAGCAGGAAATCTATTTCGGCACCTTGC CTCTGATGACCGATCGCGGCACCTTTATCGTCAACGGCACCGAACGCGTGGTGGTCAGCCAGCTCCACCGCAGCCCGGGC ATTTTTTTCGATCATGACCGCGGCCGCACCCATTCCAGCGGCAAGCTGCTCTATTCGGCGCGCATCATCCCCCTGCGCGG CTCGTGGATCGACCTGGAGTTCGACCCCAAGGACATCCTCTACGTGCGCATCGACCGGCGGCGCAAGTTCCCGGTGACCC TGCTCCTGAAGGCCCTGGGCTACTCGGCCCAGGATCTGCTGGACATGATGTACGTCAAGGACGTCTTTTTCATCGACGGC GAACAGGTCAAGCGCAAGATCCAGCCCGAGATCATGATGGGCCGCGAGGCCACCATGGAGATCCAGGATCCCGAGGGCGA AAAGCCCCTGGTCAAGCTGGGCAAGAAGATCACCCGCCGGGCCATCAAACGCCTGGAGGAACTGGGCCTGGACCGCATCC CCGTGCGCGAGGAAGACCTGCTGGGCCGTTTCGCCGCCGTCGATTTCGTCGACGCCGGCACGGGCGAGCTGATCTGCTCG CTCAACCAGCCCATCACCCACGAGATTTTGCTCAAGCTGCGCGCCGCCGGCATCGACGAGGTTCCGACCCTGTTCATCGA TGGCCAGACCCGTTCCAGCTCCTTCCGCGACACCCTCGAACTGGACAAGGTCGAAGACCCCGACGAGGCCATCATCGATA TTTACCGCAAGCTGCGGCCGTCCAACCCGCCCACGCTGGAGGTGGCCCGCACGTTTTTCAACAACTTGTTCTTTTCGCCC GAGCACTACGACCTCTCGGCGGTGGGCCGCCTGAAGGTCAACCTGCGCCTGGGCCTGGACGTGGCCGAGGAACTGCGCAC CCTGCGCCGTGAAGACATCATGGAGGCCGTGCGCCAGCTCATCGACCTCAAGGACGCCGAGGGTCCGGCCGACGACATCG ACCACCTGGGCAACCGCCGCGTGCGCGCGGTGGGCGAGCTGTTGGAAAACCAATACCGCATCGGTTTGGTGCGCATGGAG CGGGCGATCAAGGAGCGCATGAGCCTCCAGGAGATCGAGGCCCTGATGCCCCACGACCTGATCAACTCCAAGCCCGTCTC GGCGGTGGTCAAGGAGTTTTTCGGCACCAGCCAGCTCAGCCAGTTCATGGACCAGACCAACCCTCTCTCCGAGGTCACCC ACAAGCGCCGCCTGTCGGCCCTGGGGCCCGGCGGTCTGACCCGCGAGCGGGCCGGCTTCGAGGTGCGCGACGTCCACAAC ACCCACTACGGCCGCATCTGCCCCATCGAGACGCCCGAAGGCCCCAACATCGGCCTGATCGTCAGCCTCAGCACCTACGC CAGGGTCAACGACTACGGCTTCATCGAGACGCCCTATCGCACCGCCGGCGACGGCAGGGTCCACGCCGAGACCAGGTTCC TTTCGGCCCTGGAAGAGGCCGATCATCCCATCGCCCAGGCCAACGCGCTTTTGGATGACGAGGGCCGGTTCGTCAACGAT CTGGTCAGCGTGCGCAAGGAAGGCGAGTTCATGCTGCTGGGGCCCCAAGAGGTCCACTACATGGACGTTTCGCCCAACCA GTTGGTCTCGGTGGCGGCGTCTTTGGTGCCGTTTTTGGAAAACGACGACGCCAACCGCGCCCTGATGGGCTCCAACATGC AGCGCCAGGCCGTGCCGGTGCTGCGCACCATGGCCCCGCTGGTGGGCACGGGCATCGAGGAAGTGGTGGCCCGCGACTCG GGCGTGTGCGTGGTCGCCGCCGCCGACGGCGTGATCAACGACGTCGACGCCAGCCGCATCGTGGTGCGCTACGACAAACC CCTGACGGCCCAGGCCCATTCGCAGGTCAAGATCTACAAGCTGATCAAGTTCCAGCGCAGCAACCAAAACACCTGCATCA GCCAGAAGCCCATCGTCGTGCGCGGCCAGCGGGTGGTCAAGGGCCAGATCCTGGCCGACGGCGCGGCCGTGGATCACGGC GACCTGGCCTTGGGCCAGAACGCCATGGTCGCCTTCATGAGCTGGGGCGGCTACAACTACGAGGACTCCATCCTCATCAG CGAGCGCATCGTCAAGGACGACATCTTCACCTCGGTGCACATCGAGGAGTTCGAGACGGTGGCCCGCGACACCAAGCTGG GCAAGGAAGAGATCACCCGCGACATCCCCAACGTCGGCGAGGAGGCCCTGGCCAACCTGGACGAGAGTGGCATCGTGCGC ATCGGCGCCGAGATCAAGGCCGGCGACATCCTGGTGGGCAAGATCACCCCCAAGGGCGAAACCCAGCTCAGCCCCGAGGA AAAGCTGCTGCGGGCCATTTTTGGCGAGAAGGCCGGCGACGTCAAGGACACCTCCCTGCGCGTGCCGCCGGGCGTCGAGG GCATCGTCATCGACGCCAAGGTCTTCAGCCGCAAGGGCATCGAAAAAGACGAGCGCGCCCAGGCCATCGAGGACGAGGAG GTCTCCAGCCTGCTCAAGGACGAGTCCGACGAGGTGCGCATCATCCATCGCAACGCCATGGACGACATCGAGGCCTTCCT CAAGGGCCGCGTGCTGGCCAAGCCCCTGAAAAACGACATGGGCCGCGTGCTCATCGAGGCCAAGAAGGAGCTGACCGCCG CCGACCTCAAGGGCGTCACCCTCCAGCAGTTGCGTCACCTGGAGTTGGCCGGCGTCGACGAGGACGTGCAAAGCGACTTC GAGCGCATCGTTGACGGCTACGCCGAGCAGATCGAGATGATCCGCCAGGCCTTCGAGAACAAGATCGGCAAGCTGCGCCG CGGCGATGAACTGCCGCCGGGCGTGATCAAAATGGTCAAGGTATACGTGGCCATGAAGCGCAAGCTGGCCGTGGGCGACA AGATGGCCGGCCGCCACGGCAACAAGGGCGTGGTCAGCCGCATCCTGCCCGTGGAGGACATGCCCCACTTCGCCGACGGC ACGCCGGTGGACATCGTGCTCAACCCCCTGGGCGTGCCCAGCCGCATGAACGTGGGCCAGGTGCTGGAGACGCACCTTGG CTGGGCCTGCGCCGGCCTGGGCCGACGCGTGGGTCAACTGGCCGAGGCCGTGGCCGCCGCCAGGGAACAGATGGAAAAAG AGGCCCGCTTGGCCGCGCTCAAGGACTATCTGACCCAGATTTACTCGCCCGAGGAACTGGCCAAGATATCGCAAAGCGGC GACGAGGGCCTGGTGCGCAACGCCCTGTGGCTCGAGGACGGCCTGCCCATCGCCACCCCGGTCTTCGACGGCGCCTCCGA GGCCGAAATCCGCCGCCTGCTGGAGCTGGCGGGCCTGCCCACCACCGGCCAGTCGGTGCTGATCGACGGCCGCACCGGCG AACCCTTCGACCGCACGGTCACGGTGGGGGCCATGTACATGCTAAAGCTGCACCACCTGGTCGACGACAAGATTCACGCC CGCAGCATCGGGCCCTACTCGCTGGTCACCCAGCAGCCCCTGGGCGGCAAGGCCCAGTTCGGCGGCCAGCGCCTGGGCGA GATGGAGGTCTGGGCCATGGAAGCCTATGGCGCGGCCTACTCGTTGCAAGAGTTCCTCACCGTCAAGAGCGACGACGTGG CCGGACGCACCAGGATGTACGAAAAGATCGTCAAGGGCGAAAACCACCTCGAGGCCGGCCTGCCCGAGAGCTTCAACGTG TTGGTCAAGGAGTTGCAAGCCCTTTGCCTGGACGTGGAGTTGGTGGAGCAAAACAGGGAGACCCCCTACGTGCTGGAGTA A Protein sequence : MSQATETRTRVRKNFGKIAKIIDIPNLIDMQKQSYERFLQKDVAHAARRDVGLHAVFRSVFPIRDFSGTSSLEYVSYDFG EVKYDEEECLARGMTFEAPLKLTVRLVVYDIDKETDVQSIRDIKEQEIYFGTLPLMTDRGTFIVNGTERVVVSQLHRSPG IFFDHDRGRTHSSGKLLYSARIIPLRGSWIDLEFDPKDILYVRIDRRRKFPVTLLLKALGYSAQDLLDMMYVKDVFFIDG EQVKRKIQPEIMMGREATMEIQDPEGEKPLVKLGKKITRRAIKRLEELGLDRIPVREEDLLGRFAAVDFVDAGTGELICS LNQPITHEILLKLRAAGIDEVPTLFIDGQTRSSSFRDTLELDKVEDPDEAIIDIYRKLRPSNPPTLEVARTFFNNLFFSP EHYDLSAVGRLKVNLRLGLDVAEELRTLRREDIMEAVRQLIDLKDAEGPADDIDHLGNRRVRAVGELLENQYRIGLVRME RAIKERMSLQEIEALMPHDLINSKPVSAVVKEFFGTSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHN THYGRICPIETPEGPNIGLIVSLSTYARVNDYGFIETPYRTAGDGRVHAETRFLSALEEADHPIAQANALLDDEGRFVND LVSVRKEGEFMLLGPQEVHYMDVSPNQLVSVAASLVPFLENDDANRALMGSNMQRQAVPVLRTMAPLVGTGIEEVVARDS GVCVVAAADGVINDVDASRIVVRYDKPLTAQAHSQVKIYKLIKFQRSNQNTCISQKPIVVRGQRVVKGQILADGAAVDHG DLALGQNAMVAFMSWGGYNYEDSILISERIVKDDIFTSVHIEEFETVARDTKLGKEEITRDIPNVGEEALANLDESGIVR IGAEIKAGDILVGKITPKGETQLSPEEKLLRAIFGEKAGDVKDTSLRVPPGVEGIVIDAKVFSRKGIEKDERAQAIEDEE VSSLLKDESDEVRIIHRNAMDDIEAFLKGRVLAKPLKNDMGRVLIEAKKELTAADLKGVTLQQLRHLELAGVDEDVQSDF ERIVDGYAEQIEMIRQAFENKIGKLRRGDELPPGVIKMVKVYVAMKRKLAVGDKMAGRHGNKGVVSRILPVEDMPHFADG TPVDIVLNPLGVPSRMNVGQVLETHLGWACAGLGRRVGQLAEAVAAAREQMEKEARLAALKDYLTQIYSPEELAKISQSG DEGLVRNALWLEDGLPIATPVFDGASEAEIRRLLELAGLPTTGQSVLIDGRTGEPFDRTVTVGAMYMLKLHHLVDDKIHA RSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYSLQEFLTVKSDDVAGRTRMYEKIVKGENHLEAGLPESFNV LVKELQALCLDVELVEQNRETPYVLE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 57 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Deba_2945 | YP_003808892.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 58 |
| Deba_2945 | YP_003808892.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 58 |
| Deba_2945 | YP_003808892.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 57 |
| Deba_2945 | YP_003808892.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 57 |
| Deba_2945 | YP_003808892.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 57 |
| Deba_2945 | YP_003808892.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 57 |
| Deba_2945 | YP_003808892.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 57 |
| Deba_2945 | YP_003808892.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 57 |
| Deba_2945 | YP_003808892.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 57 |
| Deba_2945 | YP_003808892.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 57 |
| Deba_2945 | YP_003808892.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 57 |
| Deba_2945 | YP_003808892.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 56 |
| Deba_2945 | YP_003808892.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 56 |
| Deba_2945 | YP_003808892.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 56 |
| Deba_2945 | YP_003808892.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 56 |
| Deba_2945 | YP_003808892.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 56 |
| Deba_2945 | YP_003808892.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 55 |
