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Name : ccmF (HDN1F_28420) Accession : YP_003812068.1 Strain : gamma proteobacterium HdN1 Genome accession: NC_014366 Putative virulence/resistance : Unknown Product : cytochrome c-type biogenesis protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG1138 EC number : - Position : 3496613 - 3498607 bp Length : 1995 bp Strand : + Note : silverDB:HdN1F3812 DNA sequence : GTGAATCCGGAAATTGGCCATTTTGCTCTGGTGCTGGCGTTTGCTGTTGCGCTGTTTCAAGGGGTGCTGCCGTTGTGGGG TGTTTATCGCGGTCACCGTGGGTTGATGGCGTTGGGGCGATCGTTATCCTATGGGCAGTTTTTCTTTATGGCCCTAGCGA TTGCGTGCCTTGGCGCGGCATTTTTGCAGAATGACTTTACCGTACAGTACGTTGCGCGCAATTCGAACACCTTGCTGCCG TTCTGGTACAAGATCTCTGCGATCTGGGGAGGGCACGAGGGTTCGCTGCTGTTATGGGGATTTGTTTTGTCGGTTTGGAC GGCGGCGGTTGCGCTATTTAGCCGCTCGATTCCCGAGCCGATGATTGCGCGTGTGCTGGCCATTATGGGCTGGATCGGTG TTGGTTTTTACTCGTTTATGCTGTTCACTTCCAACCCGTTTTTACGCAATCTGCCCGATTTTCCTGCGGAAGGCGCGGAT CTTAACCCGCTCTTGCAAGATGTGGGGCTGATACTTCACCCGCCGATGCTGTATATGGGCTATGTAGGTTTTTCAGTGGC CTTCGCATTTGCTATTGCGGGCTTGCTGAGCGGGCGGATGGATAGCGCGTGGGCGCGTTGGTCACGGCCGTGGACTACGG TGGCCTGGTGTTTCCTAACGGGTGGGATTGCGTTGGGGAGCTGGTGGGCCTATTACGAGCTGGGGTGGGGTGGATGGTGG TTCTGGGATCCGGTTGAGAACGCATCCTTTATGCCGTGGTTAGTGGGTACTGCGTTGATTCACTCGCTGGCGGCAACGGA AAAACGCGGGGTGTTCAAGCCTTGGACGGTGCTGCTGGCGATTCTAGCTTTCAGCCTCTCGCTCTTGGGCACCTTCTTGG TGCGTTCCGGTGTTCTTACTTCGGTGCATGCGTTTGCTTCAGACCCTGCGCGTGGCTACTACATATTGGTGTTCTTAGTG GCCGTTATTGGTGGTTCGCTTACCTTGTTCGCGGCGCGTGCCAATGTGTTTGATACGGAATCCCGCTACGAAACGTTTTC GCGGGAGATGTTCTTACTGATCAATAATATTCTCTTGATGGTGGCGGCGGGCTACGTTCTGCTCGGTACTTTGGCGCCAA TTTTCGCGGATGTTCTTGGCCTTGGAAAGATTTCGATTGGTGAGCCATTTTTCAACACGGTTGCAGGCCCGCTGGCTGCG TTGTTGATGTTGTTGACGGGGGTCGGGCCGCTGCTTAACTGGAAGCGCCATTCAGTGAGTGCGTTACTGCGCTTGCTGAT GGTTGCTTTTGTTGGTTCCGCGATTGCGGGGGTTGTATTGGTTTGGTTGTTGGCTCAAGAAATGGCGCCTTACGTGGTTC TGGCGACGGCGTTTTGTGTTTATGCGGCGGTTCTTTTGGTGGTGGATTGCGGGCGCAAAATGAGAACCGCAAAAGCGGGC TTGTGGGCGGGTTGGCAGCGTTTGCCGCGCAGCTACCGTGGTATGTTAGTGGCGCATGCGGGCTTTATTGTTTCTATGTT AGGCATCACCTGGGTGAGCGCATTTGATGTAGAGAAAGATGTACGCTTGGCGCCTGGCGAGTCTGTCGTCGTGCAGGATT ATCGTTATGCCTTTGATGAGGTGCGCGATATTCAAGGGCCGAACTATGTTTCTACGGAAGGTGCATTTACCGTCTATAAA GGCGATCGCGTGGTGGCCAGATTGACGCCTGAGAAGCGCCGTTATCTGGCTCAAGGCAGTGTTATGACCGAGGCCGCCAT TGACGGCGGTCTGTGGCGTGATCTTTACGTCGCTTTGGGTGAGCCTTTGGGGGACGGTAGCTGGGCCGTTCGCATTTACT ATAAACCGCTGATGCGCTGGGTGTGGGGCGGTGGGTTGATTATGGCGCTTGGCGGGTTGATTGCGCTAAGCGATCGGCGT TACCGAGTTGCCAGCCGTCGAGCTTTAGCAGGTGAGCGCGCTGTGGGTGGCACAACAAGCGGGGCGGTTGCATGA Protein sequence : MNPEIGHFALVLAFAVALFQGVLPLWGVYRGHRGLMALGRSLSYGQFFFMALAIACLGAAFLQNDFTVQYVARNSNTLLP FWYKISAIWGGHEGSLLLWGFVLSVWTAAVALFSRSIPEPMIARVLAIMGWIGVGFYSFMLFTSNPFLRNLPDFPAEGAD LNPLLQDVGLILHPPMLYMGYVGFSVAFAFAIAGLLSGRMDSAWARWSRPWTTVAWCFLTGGIALGSWWAYYELGWGGWW FWDPVENASFMPWLVGTALIHSLAATEKRGVFKPWTVLLAILAFSLSLLGTFLVRSGVLTSVHAFASDPARGYYILVFLV AVIGGSLTLFAARANVFDTESRYETFSREMFLLINNILLMVAAGYVLLGTLAPIFADVLGLGKISIGEPFFNTVAGPLAA LLMLLTGVGPLLNWKRHSVSALLRLLMVAFVGSAIAGVVLVWLLAQEMAPYVVLATAFCVYAAVLLVVDCGRKMRTAKAG LWAGWQRLPRSYRGMLVAHAGFIVSMLGITWVSAFDVEKDVRLAPGESVVVQDYRYAFDEVRDIQGPNYVSTEGAFTVYK GDRVVARLTPEKRRYLAQGSVMTEAAIDGGLWRDLYVALGEPLGDGSWAVRIYYKPLMRWVWGGGLIMALGGLIALSDRR YRVASRRALAGERAVGGTTSGAVA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ccmF | YP_217241.1 | cytochrome c-type biogenesis protein | Not tested | SPI-12 | Protein | 7e-134 | 57 |
| ccmF | AAN62106.1 | putative cytochrome C-type biogenesis protein CcmF | Not tested | PAGI-2(C) | Protein | 7e-130 | 55 |
